PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G005066_P01 | ||||||||
Common Name | C1, MYB1, ZEAMMB73_024037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 28713.9 Da PI: 7.9431 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l+ +vk +G g W+ ++++ g++R++k+c++rw++yl GRMZM2G005066_P01 14 RGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.8 | 3e-14 | 74 | 112 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 eEd+ +++++++lG++ W++Ia +++ gRt++++k++w++ GRMZM2G005066_P01 74 EEDLMIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 112 9***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.121 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.64E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-9 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 65 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.665 | 66 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-10 | 66 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.39E-11 | 73 | 113 | No hit | No description |
Pfam | PF00249 | 1.4E-12 | 74 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGRRACCAKE GVKRGAWTSK EDDALAAYVK AHGEGKWREV PQKAGLRRCG KSCRLRWLNY 60 LRPNIRRGNI SYDEEDLMII RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN STLGRRAGAG 120 AGAGGSRVVI APDTGSHATP AATSGSGETG QKGAAPRADP DSAGTTTTSA AAVWAPKAVR 180 CTGGLFFFHR DTTPAHAGET ATPMAGGGLG GEAGSSEDCS SAASVSPLVG SQDEPCFSGD 240 GDCDWMDDVR ALASFLESDE DWLRCQTAGQ LA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G005066 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G005066_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY237128 | 0.0 | AY237128.1 Zea mays myb-related protein c1-I-2K1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659144.1 | 0.0 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 1e-144 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | K7V9H9 | 0.0 | K7V9H9_MAIZE; Anthocyanin regulatory C1 protein | ||||
STRING | GRMZM2G005066_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-54 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G005066_P01 |
Entrez Gene | 541757 |