PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G004957_P01 | ||||||||
Common Name | HDZIV7_OCL7, ZEAMMB73_439037, Zm.2616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 769aa MW: 83011.8 Da PI: 6.3214 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.2e-20 | 80 | 135 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F++ ++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k GRMZM2G004957_P01 80 KKRYHRHTQHQIQELEAFFKEYPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 135 688999***********************************************999 PP | |||||||
2 | START | 189.9 | 1.3e-59 | 271 | 500 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.. 77 ela +a++elv++al++ep+W e +n++e+ + f + +v ++ea+r+ +vv+m+++ l e l+d++ qW++ + GRMZM2G004957_P01 271 ELAVAAMEELVRMALLGEPLWIPALavdgattETLNEEEYARGFFPRGVgpklpeLRSEASREAVVVIMNHVSLIEMLMDVN-QWSTLFSsi 361 57899*****************99999*****************99999*********************************.******999 PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECT CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksn 159 +a+tlev+s+g galqlm+ae+q++splvp R+ f+Ry++q+++g+w++vdvSv+ + ++ ++ R++++pSg+li++++n GRMZM2G004957_P01 362 vsRAATLEVLSTGvagnynGALQLMTAEFQMPSPLVPtRECQFLRYCKQHTDGSWAVVDVSVEGQLLRTGsRQGRGRGRRRPSGCLIQEMPN 453 99*************************************************************999999989999***************** PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g+s+vtwveh++ ++ ++h l+r+lv sgla+ga++w +tl+rqce+ GRMZM2G004957_P01 454 GYSRVTWVEHAEADDMMVHDLYRPLVCSGLAFGARRWASTLERQCER 500 *********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-21 | 66 | 120 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.59E-19 | 72 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-19 | 78 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.06E-19 | 79 | 138 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 80 | 135 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.10.10.60 | 2.6E-4 | 121 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 42.54 | 262 | 503 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-32 | 263 | 502 | No hit | No description |
CDD | cd08875 | 1.89E-105 | 266 | 499 | No hit | No description |
SMART | SM00234 | 2.1E-54 | 271 | 500 | IPR002913 | START domain |
Pfam | PF01852 | 1.2E-49 | 272 | 500 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.5E-7 | 346 | 464 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.94E-23 | 526 | 749 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 769 aa Download sequence Send to blast |
MLQNMMDGHH QLAMMQQQHQ NHGQQQAATS ESDARGPRHD ELLMESKSGS DNMEGGARSG 60 GSGGEELQEE DLGLRQPARK KRYHRHTQHQ IQELEAFFKE YPHPDDKQRK ELSRELGLEP 120 LQVKFWFQNK RTQMKTQQER HENMQLRAEN EKLRAENARY KDALANASCP SCGGPAATAV 180 IGEMSFDEHH LRVENARLRD EVDRISTIAA KYVGKPAGSL LLLPPNNLSN NVSGPALSSH 240 HHLLPGGTDV FGGLHRHAGG GFDFDKGLVV ELAVAAMEEL VRMALLGEPL WIPALAVDGA 300 TTETLNEEEY ARGFFPRGVG PKLPELRSEA SREAVVVIMN HVSLIEMLMD VNQWSTLFSS 360 IVSRAATLEV LSTGVAGNYN GALQLMTAEF QMPSPLVPTR ECQFLRYCKQ HTDGSWAVVD 420 VSVEGQLLRT GSRQGRGRGR RRPSGCLIQE MPNGYSRVTW VEHAEADDMM VHDLYRPLVC 480 SGLAFGARRW ASTLERQCER LASAMASGVV VPAAAAGPAA GVVTSPEGRR SMMRLAERMV 540 ASFCGGVTAS TTHQWTTLSG SGAEDVRVMT RKSVDDPGRP PGIILNAATS FWLPVAPARV 600 FGFLRDDATR SEWDMLSNGG DVQEMAHIAN GRDHGNAVSL LRVDNANSNQ GNMLILQECC 660 TDATGSYVIY APVDVVAMNV VLNGGDPDYV ALLPSGFAIL PDGGGGGGGG SLLTVAFQIL 720 VDSVPTAKLS LGSVATVNSL IACTVERIKA AVAADNAGVA AAAAATSHH |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G004957 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G004957_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY555143 | 0.0 | AY555143.1 Zea may BAC clone c573L14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401598.1 | 0.0 | homeobox-leucine zipper protein ROC7 isoform X2 | ||||
Swissprot | A2YR02 | 0.0 | ROC7_ORYSI; Homeobox-leucine zipper protein ROC7 | ||||
TrEMBL | G2J5S1 | 0.0 | G2J5S1_MAIZE; Homeodomain leucine zipper family IV protein | ||||
STRING | GRMZM2G004957_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G004957_P01 |
Publications ? help Back to Top | |||
---|---|---|---|
|