PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G004732_P01
Common NameLOC100502402, ZEAMMB73_064161
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 426aa    MW: 44341.9 Da    PI: 6.8003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G004732_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-053113481254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +++eYIk L
  GRMZM2G004732_P01 311 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 348
                        677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.227299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-11309366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-8309356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-5309352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0001007developmental stagepollen development stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MADHQMIHPP AAATTGSKTH GHAGDWWTTT VSCSPDQLPD GFGGAGWSSA AATTAAEGNR  60
SRSGNAAASS ESPGSIHSLP TAGSSITFQE SAVGAAVGDQ GVVAMPPHPV ASGHAGSSWN  120
QPSYYFDQQA HHLSLRSPSS NNTSTMVPDS HHDDPNHQFL SNLGLELLSS SPTSSSGGFR  180
TSSSLLRSLT EPSAVATGFQ QYQQQAVNQA PPESIRDDAL QFVNSTPFWS ASAVFASAAE  240
GATSRLPASA AGPPSAQSMP ANFAVKSALL EGARGDSSSI TANKTSTDPT PRLKKSRTGT  300
PSPLPATFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE TIEYIKFLHD QVGSLSVPYL  360
KKNRQQEVPP HKVLWDGGGE AAGANGELTG RGLCLVPISS TFAVASETTT TPPLDFWTPF  420
GGPAFR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G004732
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G004732_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0880180.0BT088018.1 Zea mays full-length cDNA clone ZM_BFb0357F06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334273.10.0uncharacterized protein LOC100502402
TrEMBLA0A1D6IY450.0A0A1D6IY45_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G004732_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Representative plantOGRP1296544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.37e-41bHLH family protein