PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G004641_P03
Common NameHB64, LOC100280342
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 587aa    MW: 62181.8 Da    PI: 6.229
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G004641_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.3e-083543911954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  GRMZM2G004641_P03 354 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 391
                        554459******************************88 PP

2BELL109.61.8e-35216287172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+da+  q+
  GRMZM2G004641_P03 216 ERQDLQNKVSALMALLDQVDRKYRHYHHQMQMVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAVGAQV 287
                        799*****************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.3E-48139285IPR006563POX domain
PfamPF075261.6E-47145283IPR006563POX domain
PROSITE profilePS5007112.001332395IPR001356Homeobox domain
SMARTSM003891.7E-9335399IPR001356Homeobox domain
CDDcd000863.25E-12335396No hitNo description
SuperFamilySSF466894.15E-17336403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27338401IPR009057Homeodomain-like
PfamPF059204.6E-17352391IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MATFFSTSTN QRDLAGGGGD MSSFHHYAYS DPPAGGLMPF PATIVSSEGH VAHGGDDGGR  60
GAFVDVNARD GPTGGAEMGL QTQLLMANAA SAVQHQGLSL SLGTQGVPVS LYQYRQAEAG  120
MAAAAFLSPN QASVAATRSA QSIYVQNSRY LKAARELLDE VVNVQDAIKR KGDKSQQGKD  180
SGGGGGGGEG KDAETSDEKA GEHEGNSSAP ELSPSERQDL QNKVSALMAL LDQVDRKYRH  240
YHHQMQMVMS SFDAVAGAGA ARPYTALALQ TISRHFRSLR DAVGAQVQSL RRSLGEKDGS  300
AQGGGLPRLR YIDQQLRQQR AMQQFGMMQQ PQHAWRPQRG LPESAVSVLR AWLFEHFLHP  360
YPKDSEKLML ARQTGLSRGQ VSNWFINARV RLWKPMIEEM YREEFGAEMD SHSSSENAAG  420
NKGKDEAISS EDHEEFQSPS SAAAAAVPLP GHLSAFKSEA IGVMDAAGIG ASSSLDGAVI  480
GPYATSLNLG GGGGILQEAL AHHHHHHGGA DARFVQAYGD MAGFGGYDGG SVSLTLGLQH  540
CNEAGAGAGP AEPQALLYGS AGDFDFISGS EDRQRFGSSQ LLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-17341399159Homeobox protein Meis2
5bng_B1e-17341399159Homeobox protein Meis2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G004641
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G004641_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284970.0KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001342700.10.0uncharacterized protein LOC100280342
RefseqXP_023157783.10.0uncharacterized protein LOC100280342 isoform X1
RefseqXP_023157785.10.0uncharacterized protein LOC100280342 isoform X1
RefseqXP_023157786.10.0uncharacterized protein LOC100280342 isoform X1
RefseqXP_023157787.10.0uncharacterized protein LOC100280342 isoform X1
TrEMBLA0A060D8L10.0A0A060D8L1_MAIZE; BEL1-like homeodomain protein 3 (Fragment)
STRINGGRMZM2G004641_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-102BEL1-like homeodomain 7