PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G004641_P02 | ||||||||
Common Name | HB64, LOC100280342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 62181.8 Da PI: 6.229 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.3e-08 | 354 | 391 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ qV++WF N R + GRMZM2G004641_P02 354 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 391 554459******************************88 PP | |||||||
2 | BELL | 109.6 | 1.8e-35 | 216 | 287 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+da+ q+ GRMZM2G004641_P02 216 ERQDLQNKVSALMALLDQVDRKYRHYHHQMQMVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAVGAQV 287 799*****************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.3E-48 | 139 | 285 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-47 | 145 | 283 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 332 | 395 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-9 | 335 | 399 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.25E-12 | 335 | 396 | No hit | No description |
SuperFamily | SSF46689 | 4.15E-17 | 336 | 403 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 338 | 401 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-17 | 352 | 391 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MATFFSTSTN QRDLAGGGGD MSSFHHYAYS DPPAGGLMPF PATIVSSEGH VAHGGDDGGR 60 GAFVDVNARD GPTGGAEMGL QTQLLMANAA SAVQHQGLSL SLGTQGVPVS LYQYRQAEAG 120 MAAAAFLSPN QASVAATRSA QSIYVQNSRY LKAARELLDE VVNVQDAIKR KGDKSQQGKD 180 SGGGGGGGEG KDAETSDEKA GEHEGNSSAP ELSPSERQDL QNKVSALMAL LDQVDRKYRH 240 YHHQMQMVMS SFDAVAGAGA ARPYTALALQ TISRHFRSLR DAVGAQVQSL RRSLGEKDGS 300 AQGGGLPRLR YIDQQLRQQR AMQQFGMMQQ PQHAWRPQRG LPESAVSVLR AWLFEHFLHP 360 YPKDSEKLML ARQTGLSRGQ VSNWFINARV RLWKPMIEEM YREEFGAEMD SHSSSENAAG 420 NKGKDEAISS EDHEEFQSPS SAAAAAVPLP GHLSAFKSEA IGVMDAAGIG ASSSLDGAVI 480 GPYATSLNLG GGGGILQEAL AHHHHHHGGA DARFVQAYGD MAGFGGYDGG SVSLTLGLQH 540 CNEAGAGAGP AEPQALLYGS AGDFDFISGS EDRQRFGSSQ LLHDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 1e-17 | 341 | 399 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-17 | 341 | 399 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G004641 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G004641_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728497 | 0.0 | KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001342700.1 | 0.0 | uncharacterized protein LOC100280342 | ||||
Refseq | XP_023157783.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
Refseq | XP_023157785.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
Refseq | XP_023157786.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
Refseq | XP_023157787.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
TrEMBL | A0A060D8L1 | 0.0 | A0A060D8L1_MAIZE; BEL1-like homeodomain protein 3 (Fragment) | ||||
STRING | GRMZM2G004641_P04 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-102 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G004641_P02 |