PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G004334_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 732aa MW: 80141.6 Da PI: 6.2453 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.5 | 1.5e-15 | 77 | 116 | 17 | 56 |
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k GRMZM2G004334_P01 77 RMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 116 68***********************************998 PP | |||||||
2 | START | 147.6 | 1.1e-46 | 255 | 478 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 a +a++el+++a+a+e+ Wvk + e ++ ++ + f++ ++ ++ea+r+sg+v+m ++ lv ++d++ +W e ++ ka GRMZM2G004334_P01 255 AARAMDELIRLAQAGEQIWVKGVpgdarEVLDVGTYDSLFAKPGAafrppdINVEASRDSGLVFMSAVALVDVFMDTN-KWMEFFPgivsKA 345 6899*******************77777333334444444333337899999**************************.************* PP EEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 80 etlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 +t++v+ +g + l m+ el ++p+vp R+ f+Ry++q ++g w+++dvS++ +++ R+++ pSg+li ++sng+skvt GRMZM2G004334_P01 346 QTVDVLVNGlggrsESLIMMYEELHIMTPVVPtRELSFLRYCKQIEQGLWAVADVSLEGQRDAH-YGVPSRSRRMPSGCLIADMSNGYSKVT 436 *************************************************************987.45557999******************* PP EEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 wveh++ + lp l+r lv sg+a+ga +w+a+lqr ce+ GRMZM2G004334_P01 437 WVEHMEIEQMLPiNVLYRNLVLSGAAFGAHRWLAALQRACER 478 ************999*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-19 | 10 | 31 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-7 | 71 | 122 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.928 | 77 | 118 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.09E-13 | 77 | 121 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.7E-13 | 77 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.77E-13 | 77 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-19 | 77 | 123 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 6.6E-30 | 244 | 480 | No hit | No description |
PROSITE profile | PS50848 | 46.24 | 244 | 481 | IPR002913 | START domain |
CDD | cd08875 | 2.53E-102 | 248 | 477 | No hit | No description |
SMART | SM00234 | 4.8E-31 | 253 | 478 | IPR002913 | START domain |
Pfam | PF01852 | 2.5E-39 | 255 | 478 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.34E-19 | 496 | 724 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MDFGDEPEGS DSQRQRKRYH RHTPRQIQQL EAYDLASFPF LLLLLYSVRP PLWLFVVRRD 60 GLAERNVMAC VLAHDCRMFK ECPHPDENQR AALSRELGLE PRQIKFWFQN RRTQMKAQHE 120 RADNCFLRAE NDKIRCENIT MREALKNVIC PSCGGPPVDE DFFDEQKLRM ENARLKEELD 180 RVSSITSKYL GRPFTQMPPV PTMSVSSLDL SVGGMGSLGG PSLDLDLLSG CSSGLPYQVP 240 APVTEMERPM MVDMAARAMD ELIRLAQAGE QIWVKGVPGD AREVLDVGTY DSLFAKPGAA 300 FRPPDINVEA SRDSGLVFMS AVALVDVFMD TNKWMEFFPG IVSKAQTVDV LVNGLGGRSE 360 SLIMMYEELH IMTPVVPTRE LSFLRYCKQI EQGLWAVADV SLEGQRDAHY GVPSRSRRMP 420 SGCLIADMSN GYSKVTWVEH MEIEQMLPIN VLYRNLVLSG AAFGAHRWLA ALQRACERFA 480 SVATLGVPHH DVAGVTPEGK RSMTKLSQRM VSSFCASLSS SPLQRWTLLS GTTDVSVRVS 540 THRSTDSGQP NGVVLSAATS IWLPVPGDHV FAFVRDENAR SQWDVLSHGN QVQEVSRIPN 600 GSNPGNCISL LRGLNANQNS MLILQESCTD ASGALVVYSP IDIPAANVVM SGEDPSGIPL 660 LPSGFAILPG SGAGASSSAV VPPPGCVVTV AFQILVSNLP SSRLNAESVA TVNSLIGTTV 720 QQIKAALNCA GH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.124202 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G004334 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G004334_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066813 | 0.0 | BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649207.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | G2J5S9 | 0.0 | G2J5S9_MAIZE; Homeobox-leucine zipper protein HDG11 | ||||
STRING | GRMZM2G004334_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17920.1 | 0.0 | homeodomain GLABROUS 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G004334_P01 |