PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G004090_P01
Common NameLOC103638691, ZEAMMB73_582640, Zm.124751
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 401aa    MW: 44805.3 Da    PI: 5.8389
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G004090_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-185198148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W+++Ed+ll+++v+ +G g W+++ r  g++R++k+c++rw ++l
  GRMZM2G004090_P01 51 KGPWSPDEDKLLKNYVEAHGEGKWNKVQRNSGLNRCGKSCRLRWTNHL 98
                       79*******************************************996 PP
2Myb_DNA-binding38.82.1e-12104147146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++  eE +++++   ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G004090_P01 104 KGSFDNEEIDKILKFYLKWGPK-WAKIASRLP-GRTDNEIKNFWNT 147
                        689999**************99.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.64546102IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2446101IPR009057Homeodomain-like
SuperFamilySSF466892.4E-2748145IPR009057Homeodomain-like
SMARTSM007175.3E-1650100IPR001005SANT/Myb domain
PfamPF002491.1E-155198IPR001005SANT/Myb domain
CDDcd001675.59E-125398No hitNo description
Gene3DG3DSA:1.10.10.601.0E-20102151IPR009057Homeodomain-like
SMARTSM007171.5E-12103151IPR001005SANT/Myb domain
PROSITE profilePS5129415.388103153IPR017930Myb domain
PfamPF002491.6E-11104147IPR001005SANT/Myb domain
CDDcd001673.49E-9106147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTVVEAGEVL NLKVGENPLL EDEAKTGYVS PDDQDGETAS EKPSGAPQLK KGPWSPDEDK  60
LLKNYVEAHG EGKWNKVQRN SGLNRCGKSC RLRWTNHLRP DLKKGSFDNE EIDKILKFYL  120
KWGPKWAKIA SRLPGRTDNE IKNFWNTRIK KTEKQGLPIY PEHVLSQVKQ PQQDMNCETP  180
GLSHGKKRIR EIEIHDLMDV KILFQHLDYH KDLVVPTKPL KRRASIGSLK ISGETKETYC  240
STDLNYVLAR SESVPTGSAI ASGYPVELPS VQSSSSTLSN DWLLQCVSAS VEQQIHSSIQ  300
STETISSQTT GLLPTMSEIS FETLIPMVYP MIHSFGYSEH ESSPNTDIQA ANLSLGSDDV  360
SQYYQVASFF DPGVPDTELG ASFFNDTPPE TSFLNQQKQV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-244715123126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1247510.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G004090
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G004090_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9728200.0EU972820.1 Zea mays clone 388684 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659753.10.0transcription factor MYB3R-2
TrEMBLK7WAF30.0K7WAF3_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G004090_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Representative plantOGRP1067739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-51myb domain protein 101