PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003944_P01
Common NameLOC100382180, TCP2, ZEAMMB73_532685
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 387aa    MW: 40760 Da    PI: 9.78
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003944_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.81.8e-421072291120
                TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas..nsssgk 89 
                        aag k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s+a+  ++ss++
  GRMZM2G003944_P01 107 AAGSKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAAGasHPSSAS 198
                        5899******************************************************************9998677776666622444445 PP

                TCP  90 aaksaakskksqksaasalnlakesrakara 120
                        +a + ++  ++q++ a++l  ++++ +++++
  GRMZM2G003944_P01 199 RAVAFHHLPPPQHEVAAMLGWNHHHPHQQQQ 229
                        5555557777778888788777755533322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.349114168IPR017887Transcription factor TCP subgroup
PfamPF036346.5E-37114259IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDAPSSSTST STNSSRSASE QQHHHQQQQQ RYHHHHQAAG HQPFYYAAAS AAGMAQFMGS  60
RAIAPAVPVD VQLAQQQQQS SAAAAAAPAG SSGAAADKTK AVVPAAAAGS KRPTKDRHTK  120
VEGRGRRIRM PALCAARVFQ LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPANFSS  180
LAVSLRSAAG ASHPSSASRA VAFHHLPPPQ HEVAAMLGWN HHHPHQQQQQ QLLPPPPQQQ  240
APQDPGAGEF MRKRYREGDD DLFKDPAARQ HHPDGGDAEE HKARVTPATA MWAVAPNSAG  300
AGAFWMQPTW AFGGGGSTVQ APLQFMSTRS ANNFPAGTTM DANIGMLAAL NASGGVQQQD  360
EGQTREMAQR HRGANGGDAG RGAASPQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003944
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003944_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268970.0KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450404.11e-136transcription factor PCF3
SwissprotQ53PH21e-84PCF3_ORYSJ; Transcription factor PCF3
TrEMBLK7U8N60.0K7U8N6_MAIZE; TCP transcription factor
STRINGGRMZM2G003944_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-47TCP family protein