PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003715_P01
Common NameLOC100383037, ZEAMMB73_300955
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 664aa    MW: 73605.6 Da    PI: 4.5672
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003715_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.27.9e-5061391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrFhPtdeelv++yLk k++g+ ++++evi+e+di+k+ePwdLp k  +++++ ew+f +++d+ky++g+r+nrat +gyWkatg d+
  GRMZM2G003715_P01   6 LPVGFRFHPTDEELVSHYLKGKITGQINSEAEVIPEIDICKCEPWDLPgKsLIRSDDPEWFFLAPKDRKYPNGSRSNRATVAGYWKATGPDR 97 
                        79*************************9999*****************6446677888********************************** PP

                NAM  91 evlsk....kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                        +++sk    k  +  +g kktLvf++grapkge+t W+mheyr 
  GRMZM2G003715_P01  98 NIKSKgdksK--QftIGKKKTLVFHRGRAPKGERTGWIMHEYRT 139
                        ****965444..155***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-543160IPR003441NAC domain
PROSITE profilePS5100554.7416160IPR003441NAC domain
PfamPF023653.4E-257138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MALWALPVGF RFHPTDEELV SHYLKGKITG QINSEAEVIP EIDICKCEPW DLPGKSLIRS  60
DDPEWFFLAP KDRKYPNGSR SNRATVAGYW KATGPDRNIK SKGDKSKQFT IGKKKTLVFH  120
RGRAPKGERT GWIMHEYRTT EPQFESGKQG GYVLYRLFWK PEEKTERSSP KEMDRSGNSP  180
TTIRSSRDNQ EANEEANTPL NKKSLESALH DPIELPNSAE TPAGPRKMCL ADRNDNLVAT  240
APVVSHIPFQ GHAAGVAKVD PSAAASAHFV NPQNGNDDCN NFMSDFTPIL PHENAFFTGT  300
QQGAFGFDGN GIMNHPDALD AFLNQTLVDT DEHSSTTSKV QYDSDIPTEF ANHWNMQDEH  360
QDWWEKLDFE PYEPTLLPYD TTDLDVLSVD SGADSFNDLF NVTGITLRPQ QLDSTVQPDC  420
VFPDQGTALR RLKLQVVECG ESITKDESED EVSCVESPNY FDESVEFAAE KGVASYGDGA  480
DSTGIVIRSR YPAPSSSSES SFTQQGTAMR RLRLQLGLNE GTCPSSGDSS SCIVDESESQ  540
QKAEIEEDAS TNLAGSVDNL PGNSHDDEQK DIPEHDAEMS VSGVKSVLRL RKTSAESLKD  600
VKQEDCLEPD GRAPMQRVGF QSSIIWLVLS VAVLLLLYCG VWMSMICILV RCFAHMGSWH  660
QPDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-42515819166NAC domain-containing protein 19
3swm_B4e-42515819166NAC domain-containing protein 19
3swm_C4e-42515819166NAC domain-containing protein 19
3swm_D4e-42515819166NAC domain-containing protein 19
3swp_A4e-42515819166NAC domain-containing protein 19
3swp_B4e-42515819166NAC domain-containing protein 19
3swp_C4e-42515819166NAC domain-containing protein 19
3swp_D4e-42515819166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.63280.0ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003715
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003715_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660070.0BT066007.1 Zea mays full-length cDNA clone ZM_BFb0147I12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169185.10.0uncharacterized protein LOC100383037
TrEMBLA0A3L6G4T40.0A0A3L6G4T4_MAIZE; NAC domain-containing protein 14
TrEMBLC0PCI80.0C0PCI8_MAIZE; Protein NTM1-like 9
STRINGGRMZM2G003715_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Representative plantOGRP1297045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.26e-66NAC 014