PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003558_P01
Common NameLOC103647946, Zm.64710
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family EIL
Protein Properties Length: 595aa    MW: 63812 Da    PI: 6.7902
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003558_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3424.51.1e-129644331353
                        XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa......tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                        eel++rmw+d+++l+rlke+++q+ ++ +a       ++++++++s+eqarrkkmsraQ giLkYMlk+me+cnaqGfvYgiipe+gkpv+g
  GRMZM2G003558_P01  64 EELERRMWRDRVRLRRLKEEQQQKSGRPSAGsgakqeASSSRQRQSQEQARRKKMSRAQGGILKYMLKMMEACNAQGFVYGIIPENGKPVTG 155
                        8**********************998877764444444444555************************************************ PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
               EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                        asd+LraWWkekv+fdrngpaa +kyqa+n++++g+ +  +++ + +hsl+ lqDTtlgSLLsalmqhcdppqrrfple+gv+pPWWP+   
  GRMZM2G003558_P01 156 ASDNLRAWWKEKVRFDRNGPAAAAKYQADNAAAGGGGGVAAAALAGPHSLHVLQDTTLGSLLSALMQHCDPPQRRFPLERGVPPPWWPQA-- 245
                        *************************************************************************************99953.. PP

                        HHHHHHT--TT--..-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX...X CS
               EIN3 179 lwwgelglskdqg.tppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss...s 266
                              +++ d   +ppykkphdlkkawkv+vLtavikhmsp++++ r+l+rqsk+lqdkm+a+e  ++l+vl+qee+++ ++++  +   s
  GRMZM2G003558_P01 246 ------AVPGDLLgPPPYKKPHDLKKAWKVAVLTAVIKHMSPDVDKARRLVRQSKCLQDKMTAREIVTWLAVLRQEEELYLQLHPGARpapS 331
                        ......34556555***********************************************************************9444553 PP

                        XXX....XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX...................XXXXXXXXXXXXXXXXXXXXX......XXXXX CS
               EIN3 267 lrk....qspkvtlsceqkedvegkkesk.ikhvqavktta...................gfpvvrkrkkkpsesakvsskevsrtcqssqf 334
                        +          +   ++ ++dv+g++     +  + ++  a                   ++++ +kr +  + + +  s+   +tc + q+
  GRMZM2G003558_P01 332 SAAaaaaTTIPFR-ASSGEYDVDGEDTGMnHQPPSMDD--AghnkfvmvapaalmkeeatDAEFFQKRSA-ADPELMLGSSFRAYTCGNVQC 419
                        3331221333333.345589999554443022223333..13477889***********9********94.4445555566678******** PP

                        XX.XXXXXXXXXXXXXXXX CS
               EIN3 335 rgsetelifadknsisqne 353
                        ++     +f+d+n+++ ++
  GRMZM2G003558_P01 420 PQ-----GFPDRNARNAHQ 433
                        *5.....9*******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.9E-11464316No hitNo description
Gene3DG3DSA:1.10.3180.101.3E-58201324IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.1E-49203320IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MMGGGTLMMD HGMAAGGKAL YGECFFGEED LVNPGPAPAN EEMTTMNFPL DEMMMSDDDV  60
DGIEELERRM WRDRVRLRRL KEEQQQKSGR PSAGSGAKQE ASSSRQRQSQ EQARRKKMSR  120
AQGGILKYML KMMEACNAQG FVYGIIPENG KPVTGASDNL RAWWKEKVRF DRNGPAAAAK  180
YQADNAAAGG GGGVAAAALA GPHSLHVLQD TTLGSLLSAL MQHCDPPQRR FPLERGVPPP  240
WWPQAAVPGD LLGPPPYKKP HDLKKAWKVA VLTAVIKHMS PDVDKARRLV RQSKCLQDKM  300
TAREIVTWLA VLRQEEELYL QLHPGARPAP SSAAAAAATT IPFRASSGEY DVDGEDTGMN  360
HQPPSMDDAG HNKFVMVAPA ALMKEEATDA EFFQKRSAAD PELMLGSSFR AYTCGNVQCP  420
QGFPDRNARN AHQHTCKSNN NSVGAAVPPQ LRATESVFPA PFGPPGQAEA LGGLGFDLPV  480
DGQRSLAELM DMYETANVGG APSSLVVSNV DTVAPGVRVS APFPTPCLFG DTVRNVIQQS  540
AAAFYGRGDD APFGGDVAAA SPELRFGSGL NVAGGGALQP QPHKSTGSSN ANWFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-582003241132Protein ETHYLENE INSENSITIVE 3
4zds_B1e-582003241132Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.647100.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003558
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots (PubMed:19798512). Expressed at low levels in panicles (PubMed:19798512). Expressed in roots, leaf blades, leaf sheaths, stems, anthers of young flowers, shells, and developing grains (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512, PubMed:25995326). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Required for ethylene-promoted coleoptile elongation (PubMed:25995326). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003558_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and metyhl jasmonate. {ECO:0000269|PubMed:19798512}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280140.0KJ728014.1 Zea mays clone pUT6150 EIL transcription factor (EIL6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670668.10.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ8W3L90.0EIL2_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 2
TrEMBLA0A1D6F4K40.0A0A1D6F4K4_MAIZE; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLA0A3L6G3120.0A0A3L6G312_MAIZE; ETHYLENE INSENSITIVE 3-like 1 protein
STRINGGRMZM2G003558_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.14e-99ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]