PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003551_P01
Common NameLOC103639781, ZEAMMB73_412723
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 396aa    MW: 42365.9 Da    PI: 6.0593
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003551_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.62.3e-27141201259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDg++WrKYGqK++ g++fpr+YYrCt++    C ++k+v+rs+ d  v+++tY+geH+++
  GRMZM2G003551_P01 141 DDGFSWRKYGQKDILGAKFPRGYYRCTYRaaqACAATKQVQRSDADLCVFDVTYQGEHTCH 201
                        8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-27128202IPR003657WRKY domain
PROSITE profilePS5081121.999135198IPR003657WRKY domain
SuperFamilySSF1182907.85E-24138202IPR003657WRKY domain
SMARTSM007742.2E-38140202IPR003657WRKY domain
PfamPF031062.5E-25141201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MQDGAGAEEG GIQTLLALLA DGEEQARQLG EMVAAEDDGP WSSSRRAAAE HYRGAARRLQ  60
RTLGRAAAVA RAFEAAAPGS SRGTDRSDDS PRSADESSGR TVAVDAQAQE RQSTMCKRRK  120
GLPRWTAKFR VPETSLEATP DDGFSWRKYG QKDILGAKFP RGYYRCTYRA AQACAATKQV  180
QRSDADLCVF DVTYQGEHTC HQKPRRATAA LSAPGGRSQT PPPPPTPPAL PLEQQDPGMR  240
LLGMGFRRVL RVETAGLALH DDPDDRGPAS APAAPFSFPS VPPPLLHAGE AATTTDSIPV  300
AAAFSPPASS YGFSAPSYDC APATCYGDVY DYDYEAPQGA RMRGAESSEL GEVVSRAMVA  360
APASFDYSSS LFHHQAELDP HLPFPPFGGP PHDPYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-191422041879Disease resistance protein RRS1
5w3x_D6e-191422041879Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003551
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003551_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660715.10.0probable WRKY transcription factor 53
TrEMBLK7VAJ90.0K7VAJ9_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G003551_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-37WRKY family protein