PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003466_P01
Common NameEREB101, Zm.79998
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 300aa    MW: 31910.8 Da    PI: 7.7657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003466_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20115164255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  GRMZM2G003466_P01 115 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 164
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.10E-33114174No hitNo description
PROSITE profilePS5103223.604115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-33115173IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23115173IPR016177DNA-binding domain
SMARTSM003801.8E-38115178IPR001471AP2/ERF domain
PfamPF008471.5E-14116164IPR001471AP2/ERF domain
PRINTSPR003672.6E-11116127IPR001471AP2/ERF domain
PRINTSPR003672.6E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAATTIDWHA RNNAALPAAM YGVAVPDSKE LVRALAPPTQ QAPTISFAYP RSGVEQQSAA  60
GSFLGAGGSG LTPAQILQVQ SRLQFLRRPA GAAVATQPMK RQGVPLPQAP AVSKLYRGVR  120
QRHWGKWVAE IRLPRNRTRL WLGTFDTAEE AALAYDSAAF RLRGDSARLN FPELRRGGQH  180
LGPPLHAAVD AKLHAICNGT DVVVPLPQSR SNDATAAATA TTAPSPFSSA SPHVKSEPGS  240
SGSDSSFSAD GDVSSTGSSD VVLDMQLLDF SEAPWDDSES FGLRKYPSLE IDWDSILLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20111172163ATERF1
3gcc_A1e-20111172163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.799980.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003466
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003466_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0377050.0BT037705.1 Zea mays full-length cDNA clone ZM_BFb0189A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136823.10.0uncharacterized protein LOC100216971
TrEMBLB4FKR70.0B4FKR7_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G003466_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-45ERF family protein