PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003234_P01
Common NameLOC100384377
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 445aa    MW: 47747.8 Da    PI: 9.7662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003234_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-06205228123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C dC+++Fs +++L+ H  t H
  GRMZM2G003234_P01 205 FPCADCDEVFSKPESLELHRATrH 228
                        89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.349205233IPR007087Zinc finger, C2H2
PROSITE patternPS000280207228IPR007087Zinc finger, C2H2
SuperFamilySSF563991.63E-17230444No hitNo description
Gene3DG3DSA:3.90.228.103.2E-12231443IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPFPPVAVKE MSREARKTKS RSSPSPSSWL DRSMKFYYPS STSRKSRAQA APAAATEGKS  60
TDGGDKPSNG SSGKKKKKKK RSISIGRSMA CGSSICSTST KESSVMSRDS SSGASSRSLR  120
SPNVDAVYAS AAAAISATSS FSSVTTTAAT TVTSSTSSSS PLSSALSSPL SSIGRSFRGV  180
QIRRLSGCYE CRHSVFDPSG FAASFPCADC DEVFSKPESL ELHRATRHAV SELAPEDTSR  240
NVVEIIFQSS WLRKQTPPVC RIERVLKVQS SDRTVKRFEQ YRESVRERAR SDDQGQGKKN  300
PRCVADGNEL LRFHCATFTC SLGLAGSTAL CRAPSAQCML CSIIKEGFRV DGDGKIATMA  360
TSGRAHDTAQ LVLPDGSDKR AMLLCRVVAG RVKKASGEKC SEDSTNFDSV SLSPSTEGVY  420
SDLDELFVFN PRAILPCFVV IYSGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480KKKKKKR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003234
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003234_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699700.0BT069970.1 Zea mays full-length cDNA clone ZM_BFb0347N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170391.10.0uncharacterized protein LOC100384377
TrEMBLA0A3L6G4W50.0A0A3L6G4W5_MAIZE; Uncharacterized protein
STRINGGRMZM2G003234_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-80C2H2-like zinc finger protein