PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G002805_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 18394.4 Da PI: 8.3946 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 115 | 137 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H GRMZM2G002805_P01 115 HECHVCGLGFEMGQALGGHMRRH 137 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.99E-5 | 48 | 78 | No hit | No description |
PROSITE profile | PS50157 | 9.993 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.4E-9 | 52 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 52 | 74 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.65E-5 | 114 | 141 | No hit | No description |
Pfam | PF13912 | 1.3E-10 | 115 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.91 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MTHPRPDHEP AGEVSLALAL STDSSGGSAG APAAKRARRR GAAAATSGEG EFVCRTCSRA 60 FTSFQALGGH RTSHLRGRHG LELGVGARAL SRQQHKHHQQ AGDGGGGDRE PLAQHECHVC 120 GLGFEMGQAL GGHMRRHREE TTTGAADAWV WRADDALQRA RGGAADPPVL LELFA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27541 | 1e-159 | endosperm| meristem| pericarp| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G002805 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G002805_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042294 | 1e-157 | BT042294.1 Zea mays full-length cDNA clone ZM_BFb0193M11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644384.1 | 1e-121 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A1D6GE74 | 1e-119 | A0A1D6GE74_MAIZE; ZFP16-2 | ||||
STRING | GRMZM2G002805_P01 | 1e-120 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 | Representative plant | OGRP13900 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 4e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G002805_P01 |
Entrez Gene | 103625765 |