PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002627_P01
Common NameZm.41470
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 500aa    MW: 53246.8 Da    PI: 6.6951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002627_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000763864191654
                        HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        i +++  L++++ +      +K + a++L ++++YIk L
  GRMZM2G002627_P01 386 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 419
                        667888999999887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.801370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-9385432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-7385428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-4385424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MHLQAGGAAH LHLQYFMPQH QPQEPATDLE AQESSAVCRR SSSTSPPPPP TTMWEYHQAA  60
HAAALQTTSS PASSFPSWSP YAGTTAALLG ASSAFISTDA AGADSSSPGM RLLPAGEHGG  120
GHAYGEQSNI TCYKENFLDL LASKNVTQEM FDDVPAGHYT AQALLSGRFA AGSDVAPPVK  180
YEVTGGSPLF FGSAAATGGM HQQGMDMAAG CTTPRYTYGA DHHQMKEGGD QQQELASPAM  240
ASFLQQLSSN AAAGGGVGMH AASMDYSGTG GGLDRICHES RALEASPFGM RSLPDLSSFG  300
GYRRSTTAES TSSAQPYLQR SSSLAESSRQ QEPDIVSARS SSSGSGAASE RKKRASEERT  360
STVKKSKQEG SKPSPPKQQQ VPKVKIGEKI TALQQIVSPF GKTDTASVLF ETIKYIKFLH  420
EQVQLLSEPY TNSSRSKGNN HFPWGDHRAA AETSKQGDEA EHDLSDRGLC LVPVSWTPQV  480
YRDGTAMDYW TPAYRGCLYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.414700.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002627
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002627_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429370.0BT042937.1 Zea mays full-length cDNA clone ZM_BFc0067L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681631.10.0uncharacterized protein LOC100276393 isoform X1
TrEMBLA0A1D6HFN30.0A0A1D6HFN3_MAIZE; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGGRMZM2G002627_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12698910
Representative plantOGRP1071524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-33bHLH family protein