PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002128_P01
Common NameLOC100280222
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 302aa    MW: 32707.6 Da    PI: 6.7365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002128_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.4e-083276244
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       g+WT eE + + +a ++   +   +W+++a+ ++ gRt+ ++  ++
  GRMZM2G002128_P01 32 GAWTLEENKMFERALARVDWDapdRWERVAALLP-GRTASDVAAHY 76
                       79****************99999***********.********999 PP
2Myb_DNA-binding45.41.9e-14144188347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+++++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  GRMZM2G002128_P01 144 PWTEEEHKQFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 188
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8762680IPR017877Myb-like domain
SMARTSM007170.00123082IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-93280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-53276IPR009057Homeodomain-like
PfamPF002491.6E-63276IPR001005SANT/Myb domain
CDDcd001671.16E-63376No hitNo description
PROSITE profilePS5129417.197137193IPR017930Myb domain
SuperFamilySSF466891.22E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17140191IPR006447Myb domain, plants
SMARTSM007177.2E-13141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-12141187IPR009057Homeodomain-like
CDDcd001672.28E-11144189No hitNo description
PfamPF002498.8E-12144188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTELWMEVLP PPYFAGQAAG GWFLPDRRAG PGAWTLEENK MFERALARVD WDAPDRWERV  60
AALLPGRTAS DVAAHYDDLE CDVGCIEAGF VPFPCYGSGG GASQSAGFTF DWDAGGLGFK  120
RSCYVVGGGK RERGPDQERK KGVPWTEEEH KQFLMGLKKY GRGDWRNISR NFVTSRTPTQ  180
VASHAQKYFI RLNSGGKDKR RSSIHDITTV NLPDDDAGGT ASASPPSVLT SASAPSSTGG  240
GGPVVSEQFG VLVDSKPPAP HHHFVPHPYG NVKLEPVSSH HGGFLDDSVL MQMHCGQLQP  300
LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1528101578RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.989800.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002128
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002128_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542810.0BT054281.1 Zea mays full-length cDNA clone ZM_BFb0211P03 mRNA, complete cds.
GenBankBT0558020.0BT055802.1 Zea mays full-length cDNA clone ZM_BFb0203M07 mRNA, complete cds.
GenBankBT0666720.0BT066672.1 Zea mays full-length cDNA clone ZM_BFb0049J12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146624.10.0MYB transcription factor
SwissprotQ8S9H72e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB7ZY890.0B7ZY89_MAIZE; Duplicated homeodomain-like superfamily protein
STRINGGRMZM2G002128_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-78MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]