PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G001875_P01 | ||||||||
Common Name | LOC542611, Zm.13907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 26428.8 Da PI: 8.1132 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.1e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+++G+g +W t +++ g++R++k+c++rw++yl GRMZM2G001875_P01 14 RGPWSPEEDEALRSYVQRHGSGgNWITMPKKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.8e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd + + +qlG++ W++Ia+ m gRt++++k++w++ GRMZM2G001875_P01 69 GGFTAEEDAVIMSLYAQLGSK-WSLIASQME-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.649 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.73E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.908 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRTPCCDRA AVKRGPWSPE EDEALRSYVQ RHGSGGNWIT MPKKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTAEEDAVIM SLYAQLGSKW SLIASQMEGR TDNDVKNHWN TKLKKRLLAA 120 AAASSAPPPA PAPAPLSSTT LTSSLFPSLA IPTVKTEAYT CDDFLAPALG LGDPFAAAAA 180 AADGSTSAAS AASSASNNWS AAENGAGEAS LFLLDFCAGP DLAGADQLHL PGGYYYPLDP 240 ILPSSPRRYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.139642 | 1e-131 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G001875 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G001875_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679416 | 0.0 | HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008673589.1 | 0.0 | transcription factor RAX2 | ||||
Swissprot | Q9SJL7 | 8e-66 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A1D6MHQ1 | 0.0 | A0A1D6MHQ1_MAIZE; R2R3MYB-domain protein | ||||
TrEMBL | A0A3L6FIE6 | 0.0 | A0A3L6FIE6_MAIZE; Transcription factor MYB36 | ||||
STRING | GRMZM2G001875_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-63 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G001875_P01 |
Entrez Gene | 542611 |
Publications ? help Back to Top | |||
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