PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001824_P01
Common NameLOC100501299, MYB134, ZEAMMB73_891377
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 359aa    MW: 39128 Da    PI: 5.1947
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001824_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-1865112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+WT +Ed llv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  GRMZM2G001824_P01  65 RGPWTVDEDILLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 112
                        89********************************************97 PP
2Myb_DNA-binding51.42.5e-16118161146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T+eE++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
  GRMZM2G001824_P01 118 RGNITAEEQLLILDLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 161
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.43260116IPR017930Myb domain
SuperFamilySSF466895.99E-3063159IPR009057Homeodomain-like
SMARTSM007178.7E-1564114IPR001005SANT/Myb domain
PfamPF002495.2E-1665112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2266119IPR009057Homeodomain-like
CDDcd001674.20E-1267112No hitNo description
SMARTSM007173.3E-14117165IPR001005SANT/Myb domain
PROSITE profilePS5129418.409117167IPR017930Myb domain
PfamPF002491.4E-14118161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-22120165IPR009057Homeodomain-like
CDDcd001671.04E-11122161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDMDMAMMGF DEDLDQVLAA MGPADSSATS SAPNAAAPAP LAVVPAGSSD DEEAAAADSA  60
DDLRRGPWTV DEDILLVNYI AAHGEGRWNS LARSAGLKRT GKSCRLRWLN YLRPNVRRGN  120
ITAEEQLLIL DLHSRWGNRW SKIAQQLPGR TDNEIKNYWR TRVQKHARHL RCDVNSAHFR  180
HIVRHVWMPR LRERAQAGGV QAPATTTASA PPACYNYCGS QHLVQQQGAH RGVTAASEAH  240
HHHQYYSEPA GPTSAATALS PDDASSALRS SSLRADDASH YTAAYTYTSA ATATPTTNDQ  300
GYEQTTTDDD VFAGSTTSEL LVTATGGPDD EYSSMIGLQL QDFGFEDFEY GLWSLDDLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25621651103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001824
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001824_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0849800.0BT084980.1 Zea mays full-length cDNA clone ZM_BFb0220H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001182983.10.0uncharacterized protein LOC100501299
SwissprotQ10MB48e-86MYB2_ORYSJ; Transcription factor MYB2
TrEMBLC4J2D30.0C4J2D3_MAIZE; MYB transcription factor
STRINGGRMZM2G001824_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP1558624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-75myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]