PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G001777_P01

Common Name

LOC100384237

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

HB-other

Protein Properties

Length: 912aa MW: 100917 Da PI: 5.1496

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G001777_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.3	8.2e-06	688	748	1	54
TT--SS--HHHHHHHHHHHHHSSS--HH..HHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsae..ereeLAkkl.....gLterqVkvWFqNrRak 54 rrkRt +++eq++eLe++ ++ + ++ + ++kl ++t +q k+W Nr+ak GRMZM2G001777_P01 688 RRKRTLMNNEQIDELEKALVDEPEMHKNpvLLQSWSEKLslqgpEITASQLKNWLNNRKAK 748 89*************998655444431145666666666669**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-6	668	749	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-5	684	754	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.527	685	752	IPR001356	Homeobox domain
SMART	SM00389	4.0E-5	687	756	IPR001356	Homeobox domain
CDD	cd00086	1.56E-6	688	751	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MLFSHFLTTV QNINICSNFW KIRGSRIFTI VFSWPCYITR VSMLFWVQMI AMVSAVEELS 60 WLTSKELGEM LRESDNFVLQ SKIEDGGPKQ VDMEKVVPSL PLHLLAVCLE LGQGPDLTYV 120 LRGIRFLHSL SDLASRHTRL EQVLLDDVKL SEQVMDLIFF LLSILAEQKE NNNVGASPLV 180 HASLVAGSLH LLTNYFSSQW HELVHILLAH PKVDIFMDVA FDSLHEDELS RNGGILSLSH 240 TILKLVVPEC LKQSTDLVAS ISRLKAKILS ILLQLCEAES VSYLDEVATN PNNMRLGQTL 300 ALEVLNLLKI SFGRKINITS DSHDKGKIYP MGSVLISALR LVDVFSDDSN FRSFFLTNTV 360 PFLIQILAAP HDEFVSSWCA VNLPTIEEDA SLDYDPFGAS EVALLASDNM LTEAKANYSC 420 PFRPSVPSMA YAQTRTSCVV KIIANLHVFI PNICEEQERD LFLQNFQKHL ASGSPKLSAD 480 LPASSDFKAT KVCRNLGFLS DYAKTLVPNL LNGEDLVLLS DFADKLQSWC KSQVAVKVVQ 540 NDIPPESMDA MCPVQQLLPT RTSTPASKMN NLPKDAQNME VSTPVPPINP EGNDEDETPK 600 NTVSRNGGFL QNAVGQDLVH LGVARTTSGG PSAVASGVST GHQHNRMDLD PASSSVDNFK 660 TPELTKENGL EEDGKGESSM YDERQPKRRK RTLMNNEQID ELEKALVDEP EMHKNPVLLQ 720 SWSEKLSLQG PEITASQLKN WLNNRKAKLA RIAKERAENA DKPSTSHPGE SSESAGEDNY 780 LPPAGVMTVL SKGGSLLSPD CTEQTSQAEL SPNTTMMVRP FTRSFSLEPG RLVSLVDSDG 840 KEVGRGKIFQ APGKSTTESR VCVVDVTELR TEKWRELPHP SEAFGWTFQE AEARNGGIIR 900 VSWDAVRLFP VA

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MLFSHFLTTV QNINICSNFW KIRGSRIFTI VFSWPCYITR VSMLFWVQMI AMVSAVEELS  60
WLTSKELGEM LRESDNFVLQ SKIEDGGPKQ VDMEKVVPSL PLHLLAVCLE LGQGPDLTYV  120
LRGIRFLHSL SDLASRHTRL EQVLLDDVKL SEQVMDLIFF LLSILAEQKE NNNVGASPLV  180
HASLVAGSLH LLTNYFSSQW HELVHILLAH PKVDIFMDVA FDSLHEDELS RNGGILSLSH  240
TILKLVVPEC LKQSTDLVAS ISRLKAKILS ILLQLCEAES VSYLDEVATN PNNMRLGQTL  300
ALEVLNLLKI SFGRKINITS DSHDKGKIYP MGSVLISALR LVDVFSDDSN FRSFFLTNTV  360
PFLIQILAAP HDEFVSSWCA VNLPTIEEDA SLDYDPFGAS EVALLASDNM LTEAKANYSC  420
PFRPSVPSMA YAQTRTSCVV KIIANLHVFI PNICEEQERD LFLQNFQKHL ASGSPKLSAD  480
LPASSDFKAT KVCRNLGFLS DYAKTLVPNL LNGEDLVLLS DFADKLQSWC KSQVAVKVVQ  540
NDIPPESMDA MCPVQQLLPT RTSTPASKMN NLPKDAQNME VSTPVPPINP EGNDEDETPK  600
NTVSRNGGFL QNAVGQDLVH LGVARTTSGG PSAVASGVST GHQHNRMDLD PASSSVDNFK  660
TPELTKENGL EEDGKGESSM YDERQPKRRK RTLMNNEQID ELEKALVDEP EMHKNPVLLQ  720
SWSEKLSLQG PEITASQLKN WLNNRKAKLA RIAKERAENA DKPSTSHPGE SSESAGEDNY  780
LPPAGVMTVL SKGGSLLSPD CTEQTSQAEL SPNTTMMVRP FTRSFSLEPG RLVSLVDSDG  840
KEVGRGKIFQ APGKSTTESR VCVVDVTELR TEKWRELPHP SEAFGWTFQE AEARNGGIIR  900
VSWDAVRLFP VA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.85866	0.0	endosperm\| meristem\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G001777

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G001777_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU946678	0.0	EU946678.1 Zea mays clone 322151 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001349225.1	0.0	uncharacterized protein LOC100384237
TrEMBL	A0A3L6FZ36	0.0	A0A3L6FZ36_MAIZE; Sister-chromatid cohesion protein 3
STRING	GRMZM2G001777_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5126	14	18
Representative plant	OGRP3853	5	7

Link Out ? help Back to Top
Phytozome	GRMZM2G001777_P01