PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G001223_P04 | ||||||||
Common Name | Zm.65946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 26433.3 Da PI: 6.8806 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.3e-09 | 8 | 33 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 ++W++Ia +++ +Rt++++k++w+++l GRMZM2G001223_P04 8 RRWSSIATHLP-KRTDNEIKNYWNTHL 33 57*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.69 | 1 | 37 | IPR017930 | Myb domain |
CDD | cd00167 | 1.13E-7 | 7 | 33 | No hit | No description |
SuperFamily | SSF46689 | 3.28E-8 | 8 | 41 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-13 | 8 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 8 | 33 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MTCPRATRRW SSIATHLPKR TDNEIKNYWN THLKKRLAKM GIDPVTHKAR ADVVGGSSGA 60 GNNSGARYRA AAHLSHTAQW ESARLEAEAR LAREARLRAL SSPPPPPGPG PGPAFSGLES 120 PTSTLSFSES VLFASAAHDT HALTPRAYAE AFGAEQQQRF ADTAAAAADA APGFLAGVLL 180 GCSVAGAEKG FAASSTDASV CEQQQEEEDK GYWSSILNMV NSSMSSSSSS LTSDAVTDPA 240 AAYLPPATAA AEF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.65946 | 0.0 | cell lignification| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G001223 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G001223_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969026 | 0.0 | EU969026.1 Zea mays clone 325641 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001338724.1 | 1e-175 | uncharacterized protein LOC100279555 | ||||
TrEMBL | A0A1D6HBE4 | 1e-174 | A0A1D6HBE4_MAIZE; DNA binding protein | ||||
STRING | GRMZM2G001223_P03 | 1e-174 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 2e-24 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G001223_P04 |