PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G001139_P01 | ||||||||
Common Name | LOC100216936, ZEAMMB73_488091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23782 Da PI: 8.082 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.6 | 8e-24 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs++gkly y GRMZM2G001139_P01 9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSTSGKLYHYL 58 79*********************************************996 PP | |||||||
2 | K-box | 31.5 | 7.6e-12 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 y++++++++++ ++ + el+k ++ e +++e+R + +d e+ ++ L+ Le+ Le +++k+Rs K++ + +i++l + + +ee GRMZM2G001139_P01 72 YEATTHTKVWTDIRQERRAELEKAEQMCELMEKELRVMTVDDGEQYTVPSLELLEHSLEAAVRKVRSEKDRKIGGEINYLENIIRGRHEERY 163 566778889***********************************************************************999999999988 PP K-box 93 aLrkkl 98 L +kl GRMZM2G001139_P01 164 GLCNKL 169 888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-28 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-12 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.869 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP 60 TVPSVKDLVE RYEATTHTKV WTDIRQERRA ELEKAEQMCE LMEKELRVMT VDDGEQYTVP 120 SLELLEHSLE AAVRKVRSEK DRKIGGEINY LENIIRGRHE ERYGLCNKLA HSQASNNEGG 180 GGSTPPSSGL ELKLGTPTWI HQTTVFST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 3e-14 | 1 | 84 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.103323 | 0.0 | ear| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G001139 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G001139_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037640 | 0.0 | BT037640.1 Zea mays full-length cDNA clone ZM_BFb0185F01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001317248.1 | 1e-142 | uncharacterized protein LOC100216936 | ||||
Swissprot | Q8S151 | 1e-109 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | A0A3L6DTL1 | 1e-152 | A0A3L6DTL1_MAIZE; MADS-box transcription factor 32 | ||||
TrEMBL | B4FKK2 | 1e-152 | B4FKK2_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G001139_P01 | 1e-153 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 | Representative plant | OGRP14358 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-18 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G001139_P01 |
Entrez Gene | 100216936 |
Publications ? help Back to Top | |||
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