PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G001048_P01 | ||||||||
Common Name | LOC100192062, ZEAMMB73_443682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 503aa MW: 55394.6 Da PI: 10.1268 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49 | 1.1e-15 | 100 | 194 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv+ p+ +++ rl++p f ++ +++++++ ++l+ +sg++W+ l + s++ + +GWkeFv ++ L+ g f+vF++dg +f GRMZM2G001048_P01 100 FFKVFFPEQSTE--RLRIPPMFNQHLKEQQPTG-AVSLRGPSGNRWQAALASESESEAaWCFDQGWKEFVTDHSLRLGHFLVFTRDGPAQF- 187 889997766655..69******95555554444.8***************77555555799***********************7765555. PP .EEEEE-S CS B3 92 lvvkvfrk 99 v vf++ GRMZM2G001048_P01 188 -SVAVFSS 194 .8888875 PP | |||||||
2 | B3 | 47.1 | 4.3e-15 | 398 | 488 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++ s+v + + +f++e +++sk++tl d+ g+ W+v + y + + + +++GW +F+ n+L+ D++vF+l + e +++v+ GRMZM2G001048_P01 398 IMIESYVYVGFFMNIACEFVRESL--PRTSKKMTLWDPMGKPWDVSYVYYGDRAAGSFGGGWGRFALGNNLEKSDVCVFELFE--EDNMRVH 485 678899999999999999998884..46889******************888888889**********************865..5556888 PP EE- CS B3 96 vfr 98 ++r GRMZM2G001048_P01 486 IYR 488 877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-19 | 97 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.943 | 98 | 195 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.35E-16 | 98 | 193 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-16 | 98 | 195 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.2E-13 | 100 | 195 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-13 | 100 | 193 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-22 | 386 | 488 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-22 | 388 | 488 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.79E-21 | 393 | 488 | No hit | No description |
SMART | SM01019 | 5.3E-12 | 395 | 490 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.647 | 395 | 490 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-12 | 398 | 488 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MRGRKRQQVS ASSAAALVKG RESTKQKEKE ARKEKEAREA GREPAAKERQ MRRKAGKEKE 60 TETGGEGKEP AKEKEVREEG KENDKHKEKA KTKANVCPQF FKVFFPEQST ERLRIPPMFN 120 QHLKEQQPTG AVSLRGPSGN RWQAALASES ESEAAWCFDQ GWKEFVTDHS LRLGHFLVFT 180 RDGPAQFSVA VFSSSGVIDP AALDARPTAN GGAAVKLEDG EGVGVRGDVD AGGDTSSEVS 240 LLPAEEGDGG ATGRRTGATS GGAGGASEMS LVLREEGRGV TGKRARATTS DLPADASAPK 300 KHSALAKKAG KRRPQAATSK DVSMIVHNPT FSLLDESKTF NKTQIRDKNV PRSGKFLLRT 360 TKAPVVISQR RRVTEEEKCL ALRKAMEFKS KHPFTMQIMI ESYVYVGFFM NIACEFVRES 420 LPRTSKKMTL WDPMGKPWDV SYVYYGDRAA GSFGGGWGRF ALGNNLEKSD VCVFELFEED 480 NMRVHIYRVV PEITPLLRAS NKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.118453 | 0.0 | cell culture| ear| embryo| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G001048 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G001048_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034356 | 0.0 | BT034356.1 Zea mays full-length cDNA clone ZM_BFc0007A03 mRNA, complete cds. | |||
GenBank | BT061471 | 0.0 | BT061471.1 Zea mays full-length cDNA clone ZM_BFb0150H17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130957.1 | 0.0 | B3 domain-containing protein REM16 | ||||
TrEMBL | B4FB68 | 0.0 | B4FB68_MAIZE; B3 domain-containing protein REM16 | ||||
TrEMBL | K0D9L3 | 0.0 | K0D9L3_MAIZE; ABI36 ABI3VP1 type transcription factor (Fragment) | ||||
STRING | GRMZM2G001048_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 | Representative plant | OGRP2051 | 14 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G001048_P01 |
Entrez Gene | 100192062 |
Publications ? help Back to Top | |||
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