PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G000842_P03
Common NameZm.30459
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 542aa    MW: 60343.4 Da    PI: 8.478
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G000842_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.69.6e-12224253433
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                         k err+++NReAAr+sR+RKka++++Le+
  GRMZM2G000842_P03 224 AKTERRLAQNREAARKSRLRKKAYVQQLET 253
                        699*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-4221297IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232223265IPR004827Basic-leucine zipper domain
PfamPF001709.0E-9224254IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-7225266No hitNo description
SuperFamilySSF579593.31E-7225267No hitNo description
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
PfamPF141443.8E-28305380IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MKNHKGDSAY HCRLLLSDPC CSLPWRKVRR ARGAWRAAIM VELHHSSKQS RVEPKGALLP  60
HNLPISWSCN LQQLLLITLV SWRRPFIHGT RTSVDHGMIG SDVDTERKTA GYLAARPPTL  120
EIFPSWPMSH LQQPYSGNSH SVGSTTESSS GQNSMPQTEL VSPGSMRADS GQRQELLMVT  180
VDDYNYEQGL GAAATTAPIF QQHAAGQDKG KHGSTRKDGR LLDAKTERRL AQNREAARKS  240
RLRKKAYVQQ LETSRIRLQQ IEQELHGARS QGLFPGGGGA AGDLSSGAVI FDMEYARWLE  300
DDTKHMTELQ AVLQPQIIDA NLGAIVEDCM RHYDELFHLR AMLARSDVFH LMTGLWATTA  360
ERCFLWMGGF RPSEILKMLI PQLDPLAEPQ LIGMYNLQRS SEQTEEALVQ GLQQLHQSLA  420
DAVGASPLSD GANVANYTAL MALALDRLDT LESFYRQADS LRQQTLHQMR RILTTRQTAR  480
CFVSISEYHR RLRALSSVWA SSRPPTPPSE GVVAAAENVS PTGTTTEQAL PPYHHSQPFP  540
GF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G000842
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G000842_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688470.0EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394598.10.0transcription factor TGA6 isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A1D6M5500.0A0A1D6M550_MAIZE; Putative bZIP transcription factor superfamily protein
STRINGGRMZM2G000842_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Representative plantOGRP1069649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-117bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]