PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G000842_P02
Common NameZm.30459
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 528aa    MW: 58727.5 Da    PI: 8.1841
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G000842_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.79.3e-12210239433
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                         k err+++NReAAr+sR+RKka++++Le+
  GRMZM2G000842_P02 210 AKTERRLAQNREAARKSRLRKKAYVQQLET 239
                        699*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-4207283IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232209251IPR004827Basic-leucine zipper domain
PfamPF001708.7E-9210240IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-7211253No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-7211252No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
PfamPF141443.7E-28291366IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MHADPCCSLP WRKVRRARGA WRAAIMVELH HSSKQSRVEP KGALLPHNLP ISWSCNLQQL  60
LLITLVSWRR PFIHGTRTSV DHGMIGSDVD TERKTAGYLA ARPPTLEIFP SWPMSHLQQP  120
YSGNSHSVGS TTESSSGQNS MPQTELVSPG SMRADSGQRQ ELLMVTVDDY NYEQGLGAAA  180
TTAPIFQQHA AGQDKGKHGS TRKDGRLLDA KTERRLAQNR EAARKSRLRK KAYVQQLETS  240
RIRLQQIEQE LHGARSQGLF PGGGGAAGDL SSGAVIFDME YARWLEDDTK HMTELQAVLQ  300
PQIIDANLGA IVEDCMRHYD ELFHLRAMLA RSDVFHLMTG LWATTAERCF LWMGGFRPSE  360
ILKMLIPQLD PLAEPQLIGM YNLQRSSEQT EEALVQGLQQ LHQSLADAVG ASPLSDGANV  420
ANYTALMALA LDRLDTLESF YRQADSLRQQ TLHQMRRILT TRQTARCFVS ISEYHRRLRA  480
LSSVWASSRP PTPPSEGVVA AAENVSPTGT TTEQALPPYH HSQPFPGF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G000842
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G000842_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688470.0EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394598.10.0transcription factor TGA6 isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A1D6M5500.0A0A1D6M550_MAIZE; Putative bZIP transcription factor superfamily protein
STRINGGRMZM2G000842_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-117bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]