PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G000842_P02 | ||||||||
Common Name | Zm.30459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 528aa MW: 58727.5 Da PI: 8.1841 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.7 | 9.3e-12 | 210 | 239 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ GRMZM2G000842_P02 210 AKTERRLAQNREAARKSRLRKKAYVQQLET 239 699*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-4 | 207 | 283 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.232 | 209 | 251 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.7E-9 | 210 | 240 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.19E-7 | 211 | 253 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-7 | 211 | 252 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 214 | 229 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.7E-28 | 291 | 366 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MHADPCCSLP WRKVRRARGA WRAAIMVELH HSSKQSRVEP KGALLPHNLP ISWSCNLQQL 60 LLITLVSWRR PFIHGTRTSV DHGMIGSDVD TERKTAGYLA ARPPTLEIFP SWPMSHLQQP 120 YSGNSHSVGS TTESSSGQNS MPQTELVSPG SMRADSGQRQ ELLMVTVDDY NYEQGLGAAA 180 TTAPIFQQHA AGQDKGKHGS TRKDGRLLDA KTERRLAQNR EAARKSRLRK KAYVQQLETS 240 RIRLQQIEQE LHGARSQGLF PGGGGAAGDL SSGAVIFDME YARWLEDDTK HMTELQAVLQ 300 PQIIDANLGA IVEDCMRHYD ELFHLRAMLA RSDVFHLMTG LWATTAERCF LWMGGFRPSE 360 ILKMLIPQLD PLAEPQLIGM YNLQRSSEQT EEALVQGLQQ LHQSLADAVG ASPLSDGANV 420 ANYTALMALA LDRLDTLESF YRQADSLRQQ TLHQMRRILT TRQTARCFVS ISEYHRRLRA 480 LSSVWASSRP PTPPSEGVVA AAENVSPTGT TTEQALPPYH HSQPFPGF |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G000842 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G000842_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968847 | 0.0 | EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020394598.1 | 0.0 | transcription factor TGA6 isoform X2 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | A0A1D6M550 | 0.0 | A0A1D6M550_MAIZE; Putative bZIP transcription factor superfamily protein | ||||
STRING | GRMZM2G000842_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-117 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G000842_P02 |
Publications ? help Back to Top | |||
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