PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G000842_P01 | ||||||||
Common Name | Zm.30459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 503aa MW: 55837.1 Da PI: 7.1921 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.8 | 8.8e-12 | 185 | 214 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ GRMZM2G000842_P01 185 AKTERRLAQNREAARKSRLRKKAYVQQLET 214 699*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-4 | 182 | 258 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.232 | 184 | 226 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.2E-9 | 185 | 215 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 186 | 227 | No hit | No description |
SuperFamily | SSF57959 | 3.0E-7 | 186 | 228 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 189 | 204 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.4E-28 | 266 | 341 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MVELHHSSKQ SRVEPKGALL PHNLPISWSC NLQQLLLITL VSWRRPFIHG TRTSVDHGMI 60 GSDVDTERKT AGYLAARPPT LEIFPSWPMS HLQQPYSGNS HSVGSTTESS SGQNSMPQTE 120 LVSPGSMRAD SGQRQELLMV TVDDYNYEQG LGAAATTAPI FQQHAAGQDK GKHGSTRKDG 180 RLLDAKTERR LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QIEQELHGAR SQGLFPGGGG 240 AAGDLSSGAV IFDMEYARWL EDDTKHMTEL QAVLQPQIID ANLGAIVEDC MRHYDELFHL 300 RAMLARSDVF HLMTGLWATT AERCFLWMGG FRPSEILKML IPQLDPLAEP QLIGMYNLQR 360 SSEQTEEALV QGLQQLHQSL ADAVGASPLS DGANVANYTA LMALALDRLD TLESFYRQAD 420 SLRQQTLHQM RRILTTRQTA RCFVSISEYH RRLRALSSVW ASSRPPTPPS EGVVAAAENV 480 SPTGTTTEQA LPPYHHSQPF PGF |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G000842 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G000842_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968847 | 0.0 | EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020394598.1 | 0.0 | transcription factor TGA6 isoform X2 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | A0A1D6M550 | 0.0 | A0A1D6M550_MAIZE; Putative bZIP transcription factor superfamily protein | ||||
STRING | GRMZM2G000842_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-118 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G000842_P01 |
Publications ? help Back to Top | |||
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