PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G000126_P01
Common NameZm.132988
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 295aa    MW: 32097.9 Da    PI: 7.2629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G000126_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156890123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  GRMZM2G000126_P01 68 YTCTFCRREFRSAQALGGHMNVH 90
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.28E-66595No hitNo description
SMARTSM003550.00666890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1576895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAKYYWGMLG AATTTTRAGT GSSLIRSTWP PPAAHGGGRS GEPSWEELAF AQDAAGQLGG  60
CVWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLRQC APPDHDQEPI AAPLPAPELA  120
DHQQQLLQLH GSPMTKAAVL FSGRPAAACC THQQTYCNNN REGEGEDSPA RYISTTTTII  180
KDSKSKVLIS IPAATTATGS KKAATTIAII GEEEEEEEEE EEIMVTGRRT KRRRLVHQPF  240
YDLRRLPPAS SSPNKGGVED DDAKVPKLSS PSSLSHHLAG RQEEVDLELR LGTSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-136390229superman protein
2l1o_A6e-136390229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234KRRRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G000126
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G000126_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730830.0EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151975.20.0zinc finger, C2H2 type family protein
TrEMBLA0A1D6HQL40.0A0A1D6HQL4_MAIZE; Zinc finger, C2H2 type family protein
STRINGGRMZM2G000126_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-26zinc-finger protein 10