PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC234521.1_FGP006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 255aa MW: 27713.5 Da PI: 11.2836 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 66.4 | 9.9e-21 | 1 | 64 | 22 | 72 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssase 72 + ls+ +a++fF+Lqd+LGfdk+skt++WLl q+kpai+ l++ + ++++ AC234521.1_FGP006 1 MQLSVGVAREFFALQDRLGFDKASKTVNWLLAQSKPAIDRLNRArlgserqfvappnRTRPEQF 64 689****************************************977666666555542222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-16 | 1 | 57 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.929 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MQLSVGVARE FFALQDRLGF DKASKTVNWL LAQSKPAIDR LNRARLGSER QFVAPPNRTR 60 PEQFVAPRSL SKRAVSAEEE VAGVAARKGC VRQIGGDADE TKKVTFVEVG GDVPLKLSRR 120 NSLAAHVPMT WSRRNSLGAD VLVRQSSRNS LCAEAQDCEL RSQVTCSPVV AKPRGKSAQA 180 GSVEVGAVVP LRRSRRNSLR AAESEEVQVA VFVDRKRKCK NQENDKGVAL SAQVGASSRV 240 TRRSSHALSS LKPGE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39804 | 3e-61 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC234521.1_FG006 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC234521.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157320 | 9e-77 | AC157320.2 Zea mays clone ZMMBBb-7C14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401272.1 | 1e-81 | uncharacterized protein LOC103640817 isoform X3 | ||||
TrEMBL | A0A1D6E4L5 | 1e-165 | A0A1D6E4L5_MAIZE; Uncharacterized protein | ||||
STRING | AC234521.1_FGP006 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 2e-12 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | AC234521.1_FGP006 |