PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC234520.1_FGP003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | G2-like | ||||||||
Protein Properties | Length: 186aa MW: 19591.4 Da PI: 9.9749 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.1 | 1.5e-31 | 40 | 95 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p LH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ AC234520.1_FGP003 40 KARRCWSPGLHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 95 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.963 | 37 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 37 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.12E-16 | 37 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-26 | 40 | 95 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-6 | 42 | 93 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MPVADLSLSS PAAAASPSAA SSAVTDAAGA HRRQHAQQRK ARRCWSPGLH RRFVAALQRL 60 GGAQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRAS SDGGDQHAGG LWSSAPEQQY 120 TTSQHSTSQS QSQSGSPQGP LQLAVSSRAM SATAGDSCDA GDEAQGGRSE SYGWEMPQHG 180 TKASSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-13 | 40 | 93 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-13 | 40 | 93 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-13 | 40 | 93 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-13 | 40 | 93 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24018 | 0.0 | ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC234520.1_FG003 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00193 | DAP | Transfer from AT1G49560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC234520.1_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY661658 | 5e-50 | AY661658.1 Sorghum bicolor clone BAC 796all, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008661501.1 | 1e-129 | transcription factor HHO6 | ||||
Swissprot | Q9FX84 | 1e-35 | HHO6_ARATH; Transcription factor HHO6 | ||||
TrEMBL | A0A1D6KET4 | 1e-128 | A0A1D6KET4_MAIZE; Homeodomain-like superfamily protein | ||||
STRING | AC234520.1_FGP003 | 1e-130 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5582 | 33 | 53 | Representative plant | OGRP2563 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 6e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AC234520.1_FGP003 |
Publications ? help Back to Top | |||
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