PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC234185.1_FGP006 | ||||||||
Common Name | LOC103635357, ZEAMMB73_564612 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 25460.7 Da PI: 8.8008 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69 | 4.6e-22 | 18 | 65 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + + AC234185.1_FGP006 18 RIESDEARQVCFSKRRAGLFKKASELSILCGADVAAVVFSPAGKAFSF 65 8******************************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.717 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.7E-35 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.24E-29 | 9 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.86E-41 | 10 | 84 | No hit | No description |
PRINTS | PR00404 | 3.7E-20 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-26 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-20 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-20 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG 60 KAFSFGHPSV ESVVERFLAS SSPSPAGAGA GHSASGGEDR AVSELNRQHG ELRAQLDAVK 120 ARQERADEAI RKEREAGSPA MAWIDAELSG GAMGHDDLVA FWAALAGVQA AVAASADRLL 180 RDALLVGRRG RQQQQPAQLA GGGGVAFDVG AFGGVGVQVQ PPPGFAGVVD LQGFGGQAAA 240 ILGAGGPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-17 | 9 | 90 | 1 | 82 | MEF2 CHIMERA |
6byy_B | 1e-17 | 9 | 90 | 1 | 82 | MEF2 CHIMERA |
6byy_C | 1e-17 | 9 | 90 | 1 | 82 | MEF2 CHIMERA |
6byy_D | 1e-17 | 9 | 90 | 1 | 82 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.125827 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC234185.1_FG006 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC234185.1_FGP006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962654 | 0.0 | EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306659.1 | 1e-172 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A3L6DUS9 | 1e-170 | A0A3L6DUS9_MAIZE; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | B6TCD9 | 1e-170 | B6TCD9_MAIZE; DNA binding protein | ||||
STRING | AC234185.1_FGP006 | 1e-171 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-29 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | AC234185.1_FGP006 |
Entrez Gene | 103635357 |
Publications ? help Back to Top | |||
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