PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AC234164.1_FGP004 | ||||||||
Common Name | ZEAMMB73_433354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 630aa MW: 66847 Da PI: 6.9353 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 388.5 | 7.8e-119 | 237 | 607 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 v +L++cA+ v++ ++ +a+ +Larl e+asp+g +pm+R+aayf+eAL r++r+++++++ pp+e ++ ++ ++al++++ v+Pi AC234164.1_FGP004 237 VVALTACADSVAACNHDAANYYLARLGEMASPAGpTPMHRVAAYFAEALTLRVVRMWPQVFDVSPPRELTDGAvaADDDATALRVLNAVTPI 328 5689*****************************************************************98887788999999********* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 ++f h+t N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R ++p+++RiTgvg+ s++el+etg rL ++A++lg+ fef++ v AC234164.1_FGP004 329 PRFLHFTLNERVLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLATRVAPPAHVRITGVGE----SRQELQETGARLGRVAAALGLAFEFHA-V 415 ***********************************************************....9**************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.ea 273 ++rled++l++L+vk+gE++aVn+vl+ hrll++++ + ++L l +s+ + ++ + e+e +ns+++ +rf++al+yy+a fd++ +a AC234164.1_FGP004 416 VDRLEDVRLWMLHVKRGECVAVNCVLAAHRLLRDETGAAV--ADFLGLTRSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVeAA 505 ********************************77776666..89*********************************************889 PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgW 362 +l+ +s +r+k E++ ++rei+n+va e a+r+erhet+ Wr+r++e GF+++ +++++a q +++ r+++ + y+v+ + + l+l W AC234164.1_FGP004 506 GLADASPARAKAEEM-FAREIRNAVAFEAADRFERHETFTGWRQRMQEGGFQNAGIGDREALQGRMIARMFApG-NYSVQvqGDGEGLTLRW 595 9**************.********************************************************54.48877435677888*** PP GRAS 363 kdrpLvsvSaWr 374 +d+++++vSaW+ AC234164.1_FGP004 596 MDQAMYTVSAWT 607 ***********6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.113 | 210 | 585 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-116 | 237 | 607 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 630 aa Download sequence Send to blast |
MEVVLGSAAR RCLASTAVAA ARALLQRMST AQRFDILPYG FSKRASNRGD GSGAAPRVAA 60 PDARSGGGGG TCSFRAHPAP PVTQAVSWGA KPEPGGNGAA WERSRAVKRA HEEDAGEEYG 120 GPVVRAKRTR MGGDGDKVWF HRSIAGTVQA AGSGDGHEAE EEKAFLVPSA AAFPHGMSAA 180 AAGPSLAVAK KEEFSKSPSN SPASSGGTDG GSSAVPWPEQ LHAQNGAAAR VEAMELVVAL 240 TACADSVAAC NHDAANYYLA RLGEMASPAG PTPMHRVAAY FAEALTLRVV RMWPQVFDVS 300 PPRELTDGAV AADDDATALR VLNAVTPIPR FLHFTLNERV LRAFDGHDRV HVIDFDIKQG 360 LQWPGLLQSL ATRVAPPAHV RITGVGESRQ ELQETGARLG RVAAALGLAF EFHAVVDRLE 420 DVRLWMLHVK RGECVAVNCV LAAHRLLRDE TGAAVADFLG LTRSTGAAIL LLGEHEDALN 480 SGRWEARFAR ALRYYAAAFD AVEAAGLADA SPARAKAEEM FAREIRNAVA FEAADRFERH 540 ETFTGWRQRM QEGGFQNAGI GDREALQGRM IARMFAPGNY SVQVQGDGEG LTLRWMDQAM 600 YTVSAWTPVS DGGSTVSASV STTASHSQHS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-62 | 243 | 610 | 26 | 382 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.34299 | 0.0 | cell lignification| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | AC234164.1_FG004 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AC234164.1_FGP004 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT069876 | 0.0 | BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001308989.1 | 0.0 | ATP synthase D chain, mitochondrial | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A1D6NWE2 | 0.0 | A0A1D6NWE2_MAIZE; Scarecrow-like protein 28 | ||||
STRING | AC234164.1_FGP004 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 | Representative plant | OGRP5507 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-117 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | AC234164.1_FGP004 |
Publications ? help Back to Top | |||
---|---|---|---|
|