PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC234155.1_FGP002
Common NameZEAMMB73_579661
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 393aa    MW: 44110.3 Da    PI: 6.6964
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC234155.1_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.28.9e-342579155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  AC234155.1_FGP002 25 KPRLKWTPELHQRFVDAVNQLGGEEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 79
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.572282IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-322380IPR009057Homeodomain-like
SuperFamilySSF466897.88E-172480IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-232580IPR006447Myb domain, plants
PfamPF002492.7E-102778IPR001005SANT/Myb domain
PfamPF143792.2E-21126173IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEQHPFLRGG NAQGDSGLVL STDAKPRLKW TPELHQRFVD AVNQLGGEEK ATPKTVMRLM  60
GIPGLTLYHL KSHLQKYRLS KNLQAQANAS TSKNAIGCTP VADRIPGTTA ATMSSTNVLP  120
QAEKTIQIGE ALQMQIQVQR QLNEQLEVQR HLQLRIEAQG KYLQAVLEQA QETLGKQNLG  180
PANLEDAKIK ISELVSQVSN ECFSNAITDV KESSSVHRLE PIQIEFVESS TNSYLSVAEG  240
FIKEHKLQHH GVLKAYDDSS LFCRKRSHEH ETQFALNRSL SEHRMAHLQN EEGYHKAEFG  300
YESDTEMAHE YTAPQKNGRC STTSSASGSK VDAEKLYLEE QKCARQAVEY PRESKLVDFE  360
HPCSVNKLDL NTHNVDDTNQ AYRHFDLNGF SWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-202481158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC234155.1_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC234155.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656404.10.0myb-related protein 2
RefseqXP_008656405.10.0myb-related protein 2
TrEMBLA0A1D6FSJ70.0A0A1D6FSJ7_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGAC234155.1_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.49e-98myb-related protein 1