PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC234149.1_FGP002
Common NameLOB7, LOC103635844, ZEAMMB73_764216, Zm.129504
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 283aa    MW: 29602.5 Da    PI: 5.6527
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC234149.1_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.29.6e-2721125198
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqq 85 
                        +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+l++a+p++   r  +++sl+yeA+ r+ +P yG+vg+++++q+
  AC234149.1_FGP002  21 SCSGCRVLRKGCTDACTIRPCLqwmenPEAQANATFFLAKFYGRAGLLNLIAAAPDDAdsRASVFRSLLYEACGRIVNPLYGSVGLLWSGQW 112
                        6*****************************************************7665569******************************* PP

             DUF260  86 qleqlkaelallk 98 
                        q +  +++++l+k
  AC234149.1_FGP002 113 QKCVDAVDAVLVK 125
                        **99999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5220128IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-2121120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLPISGSVSA TGGAKARMIT SCSGCRVLRK GCTDACTIRP CLQWMENPEA QANATFFLAK  60
FYGRAGLLNL IAAAPDDADS RASVFRSLLY EACGRIVNPL YGSVGLLWSG QWQKCVDAVD  120
AVLVKGDLVV QADAAAAAPP PLGAACDIRH FPKDPDAAVA ADLLRFARAG VKRAGSSSNN  180
SSKQAKLLKG NAGKKRASRS PPLGQQQEAE ELVPVPMVVE LEHGEESAAS HHHHLQLQGS  240
EEDAGAEAAS LVKQAEAAPP VSNQVLVADQ EAEEDVGLEL TLG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC234149.1_FG002
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC234149.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277670.0KJ727767.1 Zea mays clone pUT5713 LOB transcription factor (LOB7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656445.10.0LOB domain-containing protein 40
SwissprotQ9M8861e-57LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3L6DSP70.0A0A3L6DSP7_MAIZE; LOB domain-containing protein 41
TrEMBLK7VH990.0K7VH99_MAIZE; LOB domain-containing protein 42
STRINGAC234149.1_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-54LOB domain-containing protein 41