 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
AC233960.1_FGP005 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
bHLH |
| Protein Properties |
Length: 491aa MW: 55013.6 Da PI: 5.7556 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AC233960.1_FGP005 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 23.5 | 1e-07 | 273 | 337 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-..STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkas.............kapskK..lsKaeiLekAveYIksL 54
+a+ + Er RR++ N ++ Lr+l P+++ + ++ a+i+ A+eYI++L
AC233960.1_FGP005 273 KANFATERERREQFNVKYGALRSLFPNPTkknslstvtkisrT--FTIfqNDRASIVGDAIEYINEL 337
68899**********************999****999999643..33335999***********988 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009555 | Biological Process | pollen development |
| GO:0048658 | Biological Process | anther wall tapetum development |
| GO:0052543 | Biological Process | callose deposition in cell wall |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MIAGGGYFDG SHDHILMEGS MIHDSSQSSI YDNTDVEQQN FRFAPFIIED HSNPANLTSE 60
AARVIDQIQH QLGIDIEQDH SDHMMQEVPP AETENLVPAV YGVQDHILSH QIEGPHNITV 120
EQQVLGYDPA SYRNGTYAAA HDLLNSLHIQ RCSLIPEFPS TEHIFSDPAQ NMVNRLDITN 180
DLPGVANHES GMMFSDSTVP LGYHATQSHM LKDLYHSLPQ NYGLFTSDDE RDGMVGVPGV 240
SGNIFQEIDG RQFDSPILGS RKQKGGFGKG KGKANFATER ERREQFNVKY GALRSLFPNP 300
TKKNSLSTVT KISRTFTIFQ NDRASIVGDA IEYINELNRT VKELKILLEK KRNSADRRKI 360
LKLDEEAADD GESSSMQPVS DDQNNQMNGT IRSSWVQRRS KECDVDVRIV DDEINIKFTE 420
KKRANSLLCA AKVLEEFHLE LIHVVGGIIG DHHIFMFNTK IPKGSSVYAC AVAKKLLEAV 480
EIKKQAYNIF N
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers from stage 8 to stage 10 (PubMed:23519457). Expressed in developing anthers from stage 7 to stage 11 with a peak at stages 8 and 9. Highly expressed in the tapetum (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962797 | 0.0 | EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
