PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AC233960.1_FGP003

Common Name

GLK11, LOC100502221

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

G2-like

Protein Properties

Length: 279aa MW: 30635.8 Da PI: 8.6334

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AC233960.1_FGP003	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.6e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl AC233960.1_FGP003 29 KPRLRWTPDLHERFVEAVTKLGGADKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.26	26	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-33	26	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.22E-16	29	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	29	84	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-9	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-24	129	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MNMFDGMERA GYGGGAGPMG GVVLSRDPKP RLRWTPDLHE RFVEAVTKLG GADKATPKSV 60 LRLMGMKGLT LYHLKSHLQK YRLGKQTKKD TGLDAGRGAF AAQGINFSTP VPPPSIPSTA 120 SDNTGETPLA DALKYQIEVQ RKLHEQLEVQ KKLQMRIEAQ GKYLQTILEK AQSNLSYHAT 180 GAANLEATRS QLTDFNLALS GFMDNVTQAC EQNNGELVKA MSEDGLRANN LDFQPYHGVH 240 DGDDVKCATD EGLLLLDLNI RGGYGHRIST DLKMNQHMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-22	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-22	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-22	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-22	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.35244	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AC233960.1_FG003

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AC233960.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087441	0.0	BT087441.1 Zea mays full-length cDNA clone ZM_BFb0077P10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001183627.1	0.0	uncharacterized protein LOC100502221
Swissprot	C0SVS4	2e-65	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	C4J9E4	0.0	C4J9E4_MAIZE; G2-like transcription factor
STRING	AC233960.1_FGP003	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	AC233960.1_FGP003
Entrez Gene	100502221

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]