PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC233950.1_FGP002 | ||||||||
Common Name | LOC103643875, TB1, Z178A11.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 376aa MW: 39856.4 Da PI: 7.9046 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 162.4 | 2.2e-50 | 111 | 270 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k ai+e++ + +++sec e++sss s++ ++++ AC233950.1_FGP002 111 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKSAIQEIMAD--DASSECvEDGSSSLSVDGKHNPaeq 200 589**************************************************************..6666799999999999977777888 PP TCP 89 .....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 ka+k+aa++k+++ksa++a+++ + e+rakar+rarert+ek+r+++++ AC233950.1_FGP002 201 lggggdqkpkgncrgegkkpaKASKAAATPKPPRKSANNAHQVPDkETRAKARERARERTKEKHRMRWVK 270 99999999999*********86677777888888877777776666*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-45 | 113 | 266 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.147 | 114 | 172 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.593 | 246 | 263 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MFPFCDSSSP MDLPLYQQLQ LSPSSPKTDQ SSSFYCYPCS PPFAAADASF PLSYQIGSAA 60 AADATPPQAV INSPDLPVQA LMDHAPAPAT ELGACASGAE GSGASLDRAA AAARKDRHSK 120 ICTAGGMRDR RMRLSLDVAR KFFALQDMLG FDKASKTVQW LLNTSKSAIQ EIMADDASSE 180 CVEDGSSSLS VDGKHNPAEQ LGGGGDQKPK GNCRGEGKKP AKASKAAATP KPPRKSANNA 240 HQVPDKETRA KARERARERT KEKHRMRWVK LASAIDVEAA AASGPSDRPS SNNLSHHSSL 300 SMNMPCAAAE LEERERCSSA LSNRSAGRMQ EITGASDVVL GFGNGGGGYG DGGGNYYCQE 360 QWELGGVVFQ QNSRFY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.13935 | 0.0 | ear| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC233950.1_FG002 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in axillary inflorescence primordia, immature internodes below these primordia, and immature husk surrounding these primordia. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:9087405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC233950.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF415122 | 0.0 | AF415122.1 Zea mays cultivar NC304 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415126 | 0.0 | AF415126.1 Zea mays cultivar NC348 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415128 | 0.0 | AF415128.1 Zea mays cultivar NC350 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415130 | 0.0 | AF415130.1 Zea mays cultivar NC352 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415131 | 0.0 | AF415131.1 Zea mays cultivar NC354 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415132 | 0.0 | AF415132.1 Zea mays cultivar ND246 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415134 | 0.0 | AF415134.1 Zea mays cultivar OH7B teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415138 | 0.0 | AF415138.1 Zea mays cultivar SC213 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415139 | 0.0 | AF415139.1 Zea mays cultivar SC55 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415141 | 0.0 | AF415141.1 Zea mays cultivar SG18 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415142 | 0.0 | AF415142.1 Zea mays cultivar T232 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415144 | 0.0 | AF415144.1 Zea mays cultivar TX601 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415145 | 0.0 | AF415145.1 Zea mays cultivar Tzi10 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415146 | 0.0 | AF415146.1 Zea mays cultivar Tzi18 teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415149 | 0.0 | AF415149.1 Zea mays cultivar W117HT teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415150 | 0.0 | AF415150.1 Zea mays cultivar W153R teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF415151 | 0.0 | AF415151.1 Zea mays cultivar W182B teosinte branched1 protein (tb1) gene, partial cds. | |||
GenBank | AF464738 | 0.0 | AF464738.1 Zea mays cultivar B73 putative gag protein, putative gag-pol precursor, putative transposase, putative copia-type pol polyprotein, putative copia-like retrotransposon Hopscotch polyprotein, putative gag protein, putative prpol, putative prpol, putative pol protein, putative pol protein, putative gag protein, and teosinte branched1 protein genes, complete cds. | |||
GenBank | JQ900499 | 0.0 | JQ900499.1 Zea mays subsp. mays isolate B73 teosinte branched 1 (tb1) gene, complete cds. | |||
GenBank | JQ900509 | 0.0 | JQ900509.1 Zea mays subsp. mays isolate W22 teosinte branched 1 (tb1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665277.1 | 0.0 | transcription factor TEOSINTE BRANCHED 1-like | ||||
Swissprot | Q93WI2 | 0.0 | TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1 | ||||
TrEMBL | A0A060CXX0 | 0.0 | A0A060CXX0_MAIZE; TCP transcription factor (Fragment) | ||||
TrEMBL | I3QC16 | 0.0 | I3QC16_MAIZE; Teosinte branched 1 | ||||
STRING | AC233950.1_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 | Representative plant | OGRP12650 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-24 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | AC233950.1_FGP002 |
Entrez Gene | 103643875 |