PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC233943.1_FGP002 | ||||||||
Common Name | LOB6, ra2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 26781.3 Da PI: 7.7978 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.6 | 2.5e-44 | 30 | 129 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++ AC233943.1_FGP002 30 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQK 121 7******************************************************************************************* PP DUF260 93 elallkee 100 el+++++e AC233943.1_FGP002 122 ELDAAHAE 129 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.39 | 29 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-43 | 30 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MASPSSTSNN SAFSPVAASA GTTMPGAGAP CAACKFLRRK CLPGCVFAPY FPPEEPQKFA 60 NVHKVFGASN VTKLLNELLP HQREDAVSSL AYEAEARVKD PVYGCVGAIS VLQRQVHRLQ 120 KELDAAHAEL LRYACGDVAA GIPTALPVVS AAPRLSTAPM TTTSPGQFAA GMYGSGRRLG 180 VVDGLAAPPL PPSGGGGGCY FMRNHHNNVV ISSSPGADVA PVLPYASVAN WAVNAISAST 240 TTTSGSESIG LDHKEGGDSS M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-84 | 20 | 151 | 1 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-84 | 20 | 151 | 1 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26663 | 0.0 | ear| glume| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC233943.1_FG002 |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC233943.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035538 | 0.0 | BT035538.1 Zea mays full-length cDNA clone ZM_BFb0068K20 mRNA, complete cds. | |||
GenBank | DQ327701 | 0.0 | DQ327701.1 Zea mays ramosa 2 (ra2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131918.1 | 0.0 | ramosa 2 | ||||
Refseq | XP_008672130.1 | 0.0 | ramosa 2 isoform X1 | ||||
TrEMBL | A0A3L6FL26 | 0.0 | A0A3L6FL26_MAIZE; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | Q27YF3 | 0.0 | Q27YF3_MAIZE; LOB transcription factor | ||||
STRING | AC233943.1_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-69 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | AC233943.1_FGP002 |
Entrez Gene | 100193308 |
Publications ? help Back to Top | |||
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