PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC233933.1_FGP001 | ||||||||
Common Name | EREB128, LOC103633819, Zm.145689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 27056.5 Da PI: 10.2502 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 98 | 147 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrd + ng +r++lg+f++ae Aa a+++a+++ +g AC233933.1_FGP001 98 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 147 57******.**********44465..***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.786 | 97 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-30 | 97 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-27 | 98 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 98 | 157 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-12 | 98 | 147 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.08E-15 | 98 | 156 | No hit | No description |
PRINTS | PR00367 | 4.1E-8 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 121 | 137 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MPSILAIKKV NQLQPPFLAP MGHPSSIHSF YLYSEYMATA AAAATSSSSS SSSDSLPFSM 60 VCGDEAPAAV SWRAADAEVS VAAVPGAGLR QAPSKGAFIG VRRRPWGRFA AEIRDSTRNG 120 ARVWLGTFDS AEAAAMAYDQ AALSARGSAA ALNFPVERVQ ESLRALALGG NAAGASASAG 180 GSPVLALKSR HSKRKRRKKS ELLAAAAAKG AAAAAKATAA GGRSQIKNAA AAAEQQRFVV 240 ELEDLGAEYL EELLRISESY SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-25 | 96 | 157 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 197 | KRKRRK |
2 | 192 | 198 | KRKRRKK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC233933.1_FG001 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC233933.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727702 | 0.0 | KJ727702.1 Zea mays clone pUT5641 AP2-EREBP transcription factor (EREB128) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008653717.2 | 1e-168 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A060D6G1 | 0.0 | A0A060D6G1_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | AC233933.1_FGP001 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-17 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | AC233933.1_FGP001 |
Entrez Gene | 103633819 |