PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC233899.1_FGP002 | ||||||||
Common Name | LOC100273916, ZEAMMB73_328682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 37735.9 Da PI: 5.6166 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.4 | 3e-14 | 133 | 184 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++ + + a+i+ A++Y+++L+ AC233899.1_FGP002 133 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 184 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-14 | 131 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.96E-15 | 131 | 188 | No hit | No description |
PROSITE profile | PS50888 | 16.075 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-17 | 132 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-11 | 133 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.1E-11 | 138 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MALEAVVFSQ PQAAAGHFGY GRGDSTTYAV PWCDLLQGGV GGGGGGFGDL CAAGEWDLDI 60 DTWAAAAAAA PTVELGGDDW DWEALSRDYQ SSDASTEYYH GGSRKAAAAP EPAGRRKRRR 120 AKAVKNKEEI ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP PSYAHRGDQA SIVGGAINYV 180 RELEQLLQSL EVQKSIRSRP GAGAGAADSS PFAGFFSFPQ YSATTTSAHG GCSGNNNNNT 240 GSGGNRSDAA AAGAGAAGSS AVADVEVTMV EGHASLKVLA RRRPKQLLKL VAGLHQLRIP 300 PLHLNVTTVD AMVLYTFSLK VEDDSNMGSV EDIAAAVHEI IGSIEQQQQE EGETAVM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 119 | RKRRR |
2 | 133 | 144 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.119149 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC233899.1_FG002 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC233899.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042030 | 0.0 | BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141780.2 | 0.0 | uncharacterized protein LOC100273916 | ||||
Swissprot | Q9C7T4 | 4e-77 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | K7WGI1 | 0.0 | K7WGI1_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | AC233899.1_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 | Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 6e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AC233899.1_FGP002 |
Publications ? help Back to Top | |||
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