PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC233888.1_FGP002 | ||||||||
Common Name | COL7, LOC103641806, ZEAMMB73_093452, Zm.144681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | CO-like | ||||||||
Protein Properties | Length: 323aa MW: 34011.9 Da PI: 5.0355 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 6.9e-08 | 20 | 56 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ + ++l+C+ + +lC+ C H g H AC233888.1_FGP002 20 RPCDACGAEAARLYCRADAAFLCAGCDARAH-GagsrH 56 68**************************999.435667 PP | |||||||
2 | zf-B_box | 23.1 | 1.5e-07 | 59 | 103 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC++C +H+ H++ p AC233888.1_FGP002 59 VWLCEVCEHAPAAVTCRADAAALCASCDADIHSAnplasrHERLP 103 679*****************************6688888898876 PP | |||||||
3 | CCT | 71 | 3e-24 | 236 | 279 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++ AC233888.1_FGP002 236 REARLMRYREKRKSRRFDKTIRYASRKAYAETRPRIKGRFAKRT 279 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.523 | 17 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.7E-8 | 17 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.6E-6 | 20 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.74E-9 | 20 | 61 | No hit | No description |
PROSITE profile | PS50119 | 10.324 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.2E-6 | 59 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.70E-8 | 60 | 104 | No hit | No description |
SMART | SM00336 | 6.3E-9 | 62 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.2E-18 | 236 | 278 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 236 | 278 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MKGDEKSAGG APAYWGLGAR PCDACGAEAA RLYCRADAAF LCAGCDARAH GAGSRHARVW 60 LCEVCEHAPA AVTCRADAAA LCASCDADIH SANPLASRHE RLPVAPFFGE LADAPKPFAS 120 SAAVPKAADD DGSNEAEAAS WLLPEPDHGQ KEGATTEVFF ADSDPYLDLD FARSMDDIKT 180 IGVQGGPPEL DLAGAKLFYS DDSMNHSVSS SEAAVVPDAV AGAAPEVAVV CRGLEREARL 240 MRYREKRKSR RFDKTIRYAS RKAYAETRPR IKGRFAKRTP GAGADGEEPL EEHEEIYSSA 300 AAAVAALMAP GGADADYGVV PTH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24658 | 0.0 | leaf| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC233888.1_FG002 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC233888.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727984 | 0.0 | KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663359.1 | 0.0 | zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | K7UJZ2 | 0.0 | K7UJZ2_MAIZE; C2C2-CO-like transcription factor | ||||
STRING | AC233888.1_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2191 | 32 | 72 | Representative plant | OGRP691 | 17 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 4e-45 | CONSTANS-like 3 |
Link Out ? help Back to Top | |
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Phytozome | AC233888.1_FGP002 |
Entrez Gene | 103641806 |