PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC233751.1_FGP002
Common NameZEAMMB73_646976
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 588aa    MW: 62871.7 Da    PI: 8.3358
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC233751.1_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.37.5e-22109155248
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                        C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCs 
  AC233751.1_FGP002 109 CAVDGCRADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSS 155
                        *********************************************96 PP
2SBP45.91.5e-143083384878
                        SEEETTT--SS--S-STTTT-------S--- CS
                SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        rfh l efD +krsCr+rL++hn+rrrk+q+
  AC233751.1_FGP002 308 RFHLLAEFDADKRSCRKRLDGHNRRRRKPQP 338
                        9***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-24100155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.221106177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-21107158IPR004333Transcription factor, SBP-box
PfamPF031106.4E-17109156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.588258336IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.2E-4307323IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.85E-12308341IPR004333Transcription factor, SBP-box
PfamPF031109.0E-8308335IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MDWDLKAVGA WDLAELEQDH AAATAAAGPS EGHATDTAAA GTGTGTGTES RPPGAGAPAE  60
CSVDLKLGGM GECELGAGAA TACREREAAA GATKRPRPAG QQQQQCPSCA VDGCRADLSK  120
CRDYHRRHKV CEAHSKTPVV VVAGREMRFC QQCSSAVTLF RSLRSLLLQS PHSKLLSSVS  180
FTLLSDALMR IKHLLPLPKS GLWRRGGSTD TLRSFLYPYG ERNCCTVYHR VVQELSKFKE  240
SCGHNSLVHG HMTVRVAHYT YCHQMCKTLL RNNNHGLVHF DGFKSIPSQN LLNFSIPSNT  300
REVGSPIRFH LLAEFDADKR SCRKRLDGHN RRRRKPQPDT MASASSITSQ QGTRFSPFAP  360
PRLEASWPGV MKTEESPYRI THQIHLGSSS SSRQQHFVGA ATSAYAKEGP RFPFLQEGEI  420
SFATGVVLEP PAAAPACQPL LKSGAPPPES SSAGGGKMFS DQGLTRVLDS DCALSLLSAP  480
ANYSGIDVSR MVRPTEHVPM AQQLVVSGLQ FGSASWFPRP QASTGGSFVS SCPAVQVEGE  540
QQLNAVLGPN DSEVSMNYGG MFHVGGGSGG GEGSSDGGTS SSMPFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A6e-15109154651squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397KRPRP
2318335KRSCRKRLDGHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC233751.1_FG002
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000250|UniProtKB:Q49I55}.
Functional Description ? help Back to Top
Source Description
UniProtSBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC233751.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9643610.0EU964361.1 Zea mays clone 278288 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349189.11e-178teosinte glume architecture 1-like
SwissprotQ49I571e-152TGA1B_MAIZE; Teosinte glume architecture 1
TrEMBLA0A1B1MQB51e-176A0A1B1MQB5_MAIZE; Neighbor of tga1
TrEMBLA0A3L6F6Q41e-176A0A3L6F6Q4_MAIZE; Teosinte glume architecture 1
STRINGAC233751.1_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-18SBP family protein
Publications ? help Back to Top
  1. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]