PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC232238.2_FGP004 | ||||||||
Common Name | ZEAMMB73_657560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 537aa MW: 57980.1 Da PI: 6.9586 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38 | 3.7e-12 | 224 | 253 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ AC232238.2_FGP004 224 AKTERRLAQNREAARKSRLRKKAYVQQLET 253 799*************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0027 | 221 | 274 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.795 | 223 | 259 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.2E-8 | 223 | 266 | No hit | No description |
Pfam | PF00170 | 2.3E-9 | 224 | 253 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.58E-7 | 225 | 268 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 228 | 243 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.5E-29 | 308 | 383 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MVQGEESSWR MERAALPLNQ ALAYGVQAHG AGGAAAAPPT CFLDFHQPAA AAAAYFGFGE 60 LEEALIHGGG GGVDPGVITK NDVAQAKSAA AAAGYLAGAA ARPPTLEIFP SLPMRHQQQL 120 HSGNSQSVGS TTDSSSAQNA MSQMELASPA ASSAPRQEAM MVTADGYSYK PGLAAAAAGA 180 APPSFQFQQQ HQHHHPLPLH GDGGGDHDKR KHGSTGKDGK LVDAKTERRL AQNREAARKS 240 RLRKKAYVQQ LETTRIRLQH VEHEFQRARS HSQGVGVGGC GAAGDMSCGA AMFDMEYARW 300 LDDDSKRLAE LRGGLQAHLL LDANLGLIVE ECMQHHDELF QLKAALARSD VFHLLTGSWT 360 TPAERCFFWM GGFRPSELLK VLIPQLDPLT EQQLLGICSL QQSSEQAEEA LAQGLHQLHQ 420 ALADTVAAGT LNEGSAAPNC MNIMAVALDK IASLENFYQQ ADNLRQQTLH QMRRILTTRQ 480 AARCFLSIGE YYSRLRALSN LWASRPGDTF IRSESLSPTA TELQALHHQR QNQFSGF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.16855 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC232238.2_FG004 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC232238.2_FGP004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF036949 | 0.0 | AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657030.1 | 0.0 | transcription factor LG2-like isoform X1 | ||||
Swissprot | O49067 | 0.0 | LG2_MAIZE; Transcription factor LG2 | ||||
TrEMBL | Q84UA5 | 0.0 | Q84UA5_MAIZE; Liguleless2-like protein | ||||
STRING | AC232238.2_FGP004 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3809 | 31 | 66 | Representative plant | OGRP10696 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-121 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | AC232238.2_FGP004 |
Publications ? help Back to Top | |||
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