PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC219020.4_FGP002
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 554aa    MW: 59226.9 Da    PI: 6.6316
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC219020.4_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.83.8e-31124177255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  AC219020.4_FGP002 124 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQTMNVRGLSIAHVKSHLQMYRS 177
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.496120180IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-28120178IPR009057Homeodomain-like
SuperFamilySSF466891.13E-13123178IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-22124179IPR006447Myb domain, plants
PfamPF002499.7E-8125176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGKVKQKVAT AAEDIVLEDE DDAERSSENS VPPVILDLNQ SFGEGSEEGE AGEDGSYDEE  60
DGDCDGGSMS RVAGGSSSSN SSSTNHHTSM SNKNYDTNNS SSCKGEGSGE TAQTVRQYNR  120
SKLPRLRWTP DLHMAFVHAV ERLGGQERAT PKLVLQTMNV RGLSIAHVKS HLQMYRSKKL  180
DHESAGAGHD RAAIYSVFKP MDLHMMMRRG DHRFHDMFLH RAAAAGSVIS SPLLHNGDLF  240
GSRDAVSPEA SRLYALLQRR QQPSSTQTFA LMNYSSSLID MIDQVWTFSR HAAAAAAAAR  300
AGAIDDDHGP TKGLIHDMIL RKDGRLTSHL FGLWDAIACN RTSSNAAGAA SHGARVVTST  360
DWNGTCSSSR PLSVTMSAAA STGLAMGSHH LMSRGRGGSA NDVTSLDHAV VTNEALGSRL  420
QLQTLLERNN AAKLTGEEMC GGTRTKMLKT AMEGKNGGMQ EPDLQLSFSP NDDMEGDANK  480
QIKKRKIIDG IGFSQQEVDS DKSMLPLSLS LSLRGGDIGG EDAGRFEAAA GSGGKKAALG  540
RSTLDLTMSI KALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-18125179357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-18125179357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-18125179357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-18125179357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC219020.4_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC219020.4_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649161.10.0uncharacterized protein LOC103629847
TrEMBLA0A1D6LTD00.0A0A1D6LTD0_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGAC219020.4_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-33G2-like family protein