PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC217910.3_FGP006
Common NameLOB4
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 419aa    MW: 45005.7 Da    PI: 4.6627
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC217910.3_FGP006genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.6e-3869167199
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l++e   dam +l+y++++ra+dPv G+++++l+l++qle   a
  AC217910.3_FGP006  69 ACAACKYQRRKCSPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKKLKPELCADAMGTLIYQSDMRAQDPVGGCYRLVLSLERQLEIDTA 160
                        7*****************************************************************************************99 PP

             DUF260  93 elallke 99 
                        el ++ +
  AC217910.3_FGP006 161 ELTAVLH 167
                        9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90468169IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-3669164IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTSTVSASQL HITATATGTS AVITTPSSNQ NPINARSCHH SASSSPRSST TTGGTGGGGG  60
SGSGSTNQAC AACKYQRRKC SPDCPLAPYF PADQQRRFLN AHRLFGVSNI LKTLKKLKPE  120
LCADAMGTLI YQSDMRAQDP VGGCYRLVLS LERQLEIDTA ELTAVLHHLA FCRQATTTTT  180
VMAPQQQGGG MADLDVTSSN QPLLPNEQQE VVDALYVNHE AHTAILQTDE VVHRHGGGHS  240
PTDDHHGEQQ QQQLFDYFYY DATASDDASS KPTIDINLDN MQQFDFDDSC AAAEKVDLAP  300
AAGDGEIRHH QHLDMNCQID HKDYFEIKAA SLVDAFDIRQ DLQPVADVNA EVDIDIKTVD  360
MNAGIGIDMK AMDMNANVDV NADLQGDDAA VNVSTCEAEA AKMAAESSHC RLGLGFSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-237016412106LOB family transfactor Ramosa2.1
5ly0_B5e-237016412106LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.255140.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC217910.3_FG006
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC217910.3_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9635040.0EU963504.1 Zea mays clone 263389 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143813.10.0uncharacterized protein LOC100276588
TrEMBLB6TET90.0B6TET9_MAIZE; LOB domain-containing protein 22
STRINGAC217910.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-39LOB domain-containing protein 22
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]