PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC217264.3_FGP005 | ||||||||
Common Name | LOC103643621, Zm.100730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 454aa MW: 48277.7 Da PI: 6.8273 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l d v+ +G g+W+++ r+ g+ R++k+c++rw ++l AC217264.3_FGP005 43 KGPWTASEDAMLMDHVRHHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 90 79******************************99***********996 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++ AC217264.3_FGP005 96 KGSFSPDEELLIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 139 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.349 | 38 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-13 | 42 | 92 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.83E-28 | 42 | 137 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.1E-14 | 43 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-21 | 44 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-10 | 45 | 90 | No hit | No description |
PROSITE profile | PS51294 | 22.717 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 96 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 98 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.28E-11 | 98 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MERSRPGAAP TPSPEEEVAA EGHAHGDDVT GQEEEATPVV LKKGPWTASE DAMLMDHVRH 60 HGEGNWNAVQ RMTGLLRCGK SCRLRWTNHL RPNLKKGSFS PDEELLIAQL HAQLGNKWAR 120 MAAHLPGRTD NEIKNYWNTR TKRRQRAGLP VYPPEVQLHL ALSKRCHYDD YDFPPLASSP 180 QLSATTTTDV QALGAGPGYA SSRPAPLDLA RSQLAATTTQ QTAQFLSPPP FSAPSSPWAK 240 PFARNAQYFQ LAHSSPVSPS TPTGPVHPAM PDLSLGGHGA RAAAAADQSR LPPLSPSPGP 300 RVELPSNQYG QPAPPTSAAA VAAGLALPDH QNAASLEQML QELHDVIKVE PQALVPASGG 360 GAALERHDCG VSVPESRISG LQRRGDDMDT LFGLVHPALG APETAPAAAA SNHSGSTSRH 420 STADQNPSTV GNSSPDQDWG LDGVCQWSNV SRIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-28 | 41 | 144 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC217264.3_FG005 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC217264.3_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042537 | 0.0 | BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds. | |||
GenBank | KJ727532 | 0.0 | KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665006.1 | 0.0 | transcription factor MYB120 | ||||
TrEMBL | A0A317YIZ9 | 0.0 | A0A317YIZ9_MAIZE; Transcription factor MYB101 | ||||
STRING | AC217264.3_FGP005 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7420 | 37 | 50 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 8e-66 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | AC217264.3_FGP005 |
Entrez Gene | 103643621 |