PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC216247.3_FGP001
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 324aa    MW: 36076.4 Da    PI: 8.491
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC216247.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.7e-35521442103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+++++ed+++++++sw e+g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+l
  AC216247.3_FGP001  52 FLTKTFQLVEDHRTDHVVSWGEDGATFVVWRPPEFARDLLPSYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHL 134
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+ks+
  AC216247.3_FGP001 135 LSEIHRRKSS 144
                        *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.94E-3348141IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-3748141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5748141IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.7E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-19103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAAFLVERRG AARGGGCGDT TTGRGGVRSM DADMGMSSHA AANKPAPGPA PFLTKTFQLV  60
EDHRTDHVVS WGEDGATFVV WRPPEFARDL LPSYFKHNNF SSFVRQLNTY GFRKIVADRW  120
EFANEFFRKG AKHLLSEIHR RKSSSCSQPP QKLQPPPLPQ HQRPYDLSLF FPPPQPPRHP  180
TSGYHVVQEE DHGHGGNKDF LATLSEDNRE LRRRNSLLLS ELAHMRRLYN DIIYFLQNHV  240
EPVPPPPPGT TTTAASCRLV ELGSADDASA AQTWRPRRGD DDEAPVKLFG VRLNDGKKRR  300
AQQVVPLEEK GGGNDQGEGL ADGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-21241439131Heat shock factor protein 1
5d5v_B1e-21241439131Heat shock factor protein 1
5d5v_D1e-21241439131Heat shock factor protein 1
5d8k_B1e-21521455109Heat shock factor protein 2
5d8l_B1e-21521455109Heat shock factor protein 2
5d8l_D1e-21521455109Heat shock factor protein 2
5d8l_F1e-21521455109Heat shock factor protein 2
5d8l_H1e-21521455109Heat shock factor protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.797804e-95ear| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC216247.3_FG001
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC216247.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656017.10.0heat stress transcription factor B-4d
SwissprotQ10KX84e-96HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A1D6K4150.0A0A1D6K415_MAIZE; Heat stress transcription factor B-4
STRINGAC216247.3_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-53heat shock transcription factor B4