PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AC215290.3_FGP002 | ||||||||
Common Name | LOC103648575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 484aa MW: 51522.8 Da PI: 7.2793 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.3e-05 | 318 | 340 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+ksFs++ L H+ +H AC215290.3_FGP002 318 HTCPTCHKSFSTHQALGGHMASH 340 79******************999 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00033 | 417 | 439 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k+Fs+ L H r+H AC215290.3_FGP002 417 HKCDECTKTFSSGQALGGHKRKH 439 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.8E-6 | 57 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0068 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.51E-8 | 58 | 79 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.51E-8 | 313 | 340 | No hit | No description |
Pfam | PF13912 | 1.8E-8 | 318 | 340 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.492 | 318 | 345 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 318 | 340 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 320 | 340 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.13E-5 | 415 | 441 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 416 | 439 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.5E-12 | 417 | 441 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 417 | 444 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.042 | 417 | 439 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 419 | 439 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 484 aa Download sequence Send to blast |
MNSRALQLQL QAAEAAAPVH AGEDGEPEAT PKAPLLKIQG QGSGLARSMG TTTGNATKCP 60 ECPKWFPSLK AMCGHLRQHP DRDYRGATRP TPATISAAAA VAVAVAGDNE PTNKVPRKES 120 VVVAINMVAA AASAVQKQPW EEAETKWPAK AKRGRTSVAP MQASSISEEE EAAMEEEAAM 180 ILLEMSRTSS ETQQRQQPVE PVRSPYAVSG HQIQTTSVVE ELMQQQTPEN ALELSAESQT 240 SVAKHVTDLV EAVLIMVPAN KAIFPSLNSG AGDKKPKKRW VRNPGRTAAS TTSPPPPEGA 300 VRTPPARRIP SPASGKMHTC PTCHKSFSTH QALGGHMASH VKNKTTSARH DDHAAAHAMI 360 KPDVLAHSDQ SAGNGDVDII PASDDGAGKG GALQERQDAQ PPPPARAPTP PQTSAPHKCD 420 ECTKTFSSGQ ALGGHKRKHW SLEKQQARAA LPAPAPVIEP EPELRDFDLN ELPKEEQFQD 480 NNQP |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | AC215290.3_FG002 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AC215290.3_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008671246.1 | 0.0 | uncharacterized protein LOC103648575 | ||||
TrEMBL | A0A1D6E8Q2 | 0.0 | A0A1D6E8Q2_MAIZE; OSJNBa0089K21.8-like protein | ||||
STRING | AC215290.3_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14400 | 14 | 25 | Representative plant | OGRP10972 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | AC215290.3_FGP002 |
Entrez Gene | 103648575 |