PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC215290.3_FGP002
Common NameLOC103648575
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 484aa    MW: 51522.8 Da    PI: 7.2793
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC215290.3_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05318340123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C+ksFs++  L  H+ +H
  AC215290.3_FGP002 318 HTCPTCHKSFSTHQALGGHMASH 340
                        79******************999 PP

2zf-C2H212.90.00033417439123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+k+Fs+   L  H r+H
  AC215290.3_FGP002 417 HKCDECTKTFSSGQALGGHKRKH 439
                        79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.8E-65781IPR007087Zinc finger, C2H2
SMARTSM003550.00685779IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.51E-85879No hitNo description
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576674.51E-8313340No hitNo description
PfamPF139121.8E-8318340IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492318345IPR007087Zinc finger, C2H2
SMARTSM003550.015318340IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280320340IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-5415441No hitNo description
Gene3DG3DSA:3.30.160.604.4E-5416439IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.5E-12417441IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367417444IPR007087Zinc finger, C2H2
SMARTSM003550.042417439IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNSRALQLQL QAAEAAAPVH AGEDGEPEAT PKAPLLKIQG QGSGLARSMG TTTGNATKCP  60
ECPKWFPSLK AMCGHLRQHP DRDYRGATRP TPATISAAAA VAVAVAGDNE PTNKVPRKES  120
VVVAINMVAA AASAVQKQPW EEAETKWPAK AKRGRTSVAP MQASSISEEE EAAMEEEAAM  180
ILLEMSRTSS ETQQRQQPVE PVRSPYAVSG HQIQTTSVVE ELMQQQTPEN ALELSAESQT  240
SVAKHVTDLV EAVLIMVPAN KAIFPSLNSG AGDKKPKKRW VRNPGRTAAS TTSPPPPEGA  300
VRTPPARRIP SPASGKMHTC PTCHKSFSTH QALGGHMASH VKNKTTSARH DDHAAAHAMI  360
KPDVLAHSDQ SAGNGDVDII PASDDGAGKG GALQERQDAQ PPPPARAPTP PQTSAPHKCD  420
ECTKTFSSGQ ALGGHKRKHW SLEKQQARAA LPAPAPVIEP EPELRDFDLN ELPKEEQFQD  480
NNQP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC215290.3_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC215290.3_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671246.10.0uncharacterized protein LOC103648575
TrEMBLA0A1D6E8Q20.0A0A1D6E8Q2_MAIZE; OSJNBa0089K21.8-like protein
STRINGAC215290.3_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Representative plantOGRP1097248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-12C2H2 family protein