PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC214648.3_FGP005 | ||||||||
Common Name | LOC103635941, ZEAMMB73_346319 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 22149.3 Da PI: 7.4492 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138 | 3.3e-43 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpe +r da+ss+vyeA ar+rdPvyG++g i++lq+q++ lka AC214648.3_FGP005 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEAHRGDAVSSMVYEAAARVRDPVYGCAGAIWQLQRQVNDLKA 127 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e AC214648.3_FGP005 128 QLARAHAE 135 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.879 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-43 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDCSSDTAVC AVAVAAAAAP SPPSSSPRPP APALSPCAAC KILRRRCVDR CVLAPYFPPT 60 EPHKFATAHR VFGASNIIKL LQELPEAHRG DAVSSMVYEA AARVRDPVYG CAGAIWQLQR 120 QVNDLKAQLA RAHAELAGAR AQHAHLLALL CVEVAASSPP SYDCAAGYSA SPSRHQLAAV 180 VAANPVMADA VDGALHQTQA GPVSWAEEAL WT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-44 | 18 | 136 | 1 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-44 | 18 | 136 | 1 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC214648.3_FG005 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC214648.3_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656534.1 | 1e-150 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-60 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | K7V244 | 1e-149 | K7V244_MAIZE; Putative LOB domain-containing family protein | ||||
STRING | AC214648.3_FGP005 | 1e-149 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-48 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | AC214648.3_FGP005 |
Entrez Gene | 103635941 |