PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC213884.3_FGP002 | ||||||||
Common Name | LOC103630256, MYB119, Zm.131885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 38543.8 Da PI: 7.4103 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.9 | 6.3e-20 | 55 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEdell +a++++G+++W+ I+++++ gR++k+c++rw + AC213884.3_FGP002 55 KGSWTPEEDELLRRAITRHGPRNWTVISSEIP-GRSGKSCRLRWCNQ 100 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 61.3 | 2e-19 | 107 | 151 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEd ++v a++q+G++ W+tIar++ gRt++++k++w++ AC213884.3_FGP002 107 RRAFTPEEDAIIVAAHAQHGNR-WATIARMLH-GRTDNSVKNHWNST 151 678*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.494 | 50 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-30 | 52 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-17 | 54 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-19 | 55 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 56 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.97E-16 | 57 | 99 | No hit | No description |
SMART | SM00717 | 1.9E-15 | 106 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-16 | 107 | 151 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.678 | 107 | 156 | IPR017930 | Myb domain |
CDD | cd00167 | 1.13E-12 | 109 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 109 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MVVSSSGGAG GVEGGSGCGV SASVPPVVSS SGGAGEVEGG DGGSAAVSGC RRRVKGSWTP 60 EEDELLRRAI TRHGPRNWTV ISSEIPGRSG KSCRLRWCNQ LSPSVERRAF TPEEDAIIVA 120 AHAQHGNRWA TIARMLHGRT DNSVKNHWNS TLLRQRRAAA AHASAAGCAL QLRPATTASV 180 PLRHLLDRPK EAAASVSFRR LDPKAEEEED EDMDEGGSSS EDSAHRHRSL SPAPVEPLTL 240 NLFSDGAHGL PTPAPAPAPQ GTAARTEGAA MRRKAKLEQD PWLSGGVHGA PAPAPQSAAA 300 RTEGAVVTRM KTKLEHDPWL VTLVRQMISV EVERQMHGVG PQARSSAGGG GGADGDGVNG 360 QDTSMDVDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-34 | 54 | 155 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-34 | 54 | 155 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC213884.3_FG002 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC213884.3_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727659 | 0.0 | KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649548.1 | 0.0 | transcription factor MYB3R-3 | ||||
TrEMBL | K7V3M2 | 0.0 | K7V3M2_MAIZE; MYB transcription factor (Fragment) | ||||
STRING | AC213884.3_FGP002 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 9e-52 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | AC213884.3_FGP002 |
Entrez Gene | 103630256 |