PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC213884.3_FGP002
Common NameLOC103630256, MYB119, Zm.131885
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 369aa    MW: 38543.8 Da    PI: 7.4103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC213884.3_FGP002genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.3e-2055100147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +g+WT+eEdell +a++++G+++W+ I+++++ gR++k+c++rw + 
  AC213884.3_FGP002  55 KGSWTPEEDELLRRAITRHGPRNWTVISSEIP-GRSGKSCRLRWCNQ 100
                        799*****************************.***********985 PP
2Myb_DNA-binding61.32e-19107151147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r ++T+eEd ++v a++q+G++ W+tIar++  gRt++++k++w++ 
  AC213884.3_FGP002 107 RRAFTPEEDAIIVAAHAQHGNR-WATIARMLH-GRTDNSVKNHWNST 151
                        678*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.49450105IPR017930Myb domain
SuperFamilySSF466896.36E-3052148IPR009057Homeodomain-like
SMARTSM007175.2E-1754103IPR001005SANT/Myb domain
PfamPF002496.9E-1955100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2456108IPR009057Homeodomain-like
CDDcd001674.97E-165799No hitNo description
SMARTSM007171.9E-15106154IPR001005SANT/Myb domain
PfamPF002497.6E-16107151IPR001005SANT/Myb domain
PROSITE profilePS5129420.678107156IPR017930Myb domain
CDDcd001671.13E-12109152No hitNo description
Gene3DG3DSA:1.10.10.602.4E-22109154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVVSSSGGAG GVEGGSGCGV SASVPPVVSS SGGAGEVEGG DGGSAAVSGC RRRVKGSWTP  60
EEDELLRRAI TRHGPRNWTV ISSEIPGRSG KSCRLRWCNQ LSPSVERRAF TPEEDAIIVA  120
AHAQHGNRWA TIARMLHGRT DNSVKNHWNS TLLRQRRAAA AHASAAGCAL QLRPATTASV  180
PLRHLLDRPK EAAASVSFRR LDPKAEEEED EDMDEGGSSS EDSAHRHRSL SPAPVEPLTL  240
NLFSDGAHGL PTPAPAPAPQ GTAARTEGAA MRRKAKLEQD PWLSGGVHGA PAPAPQSAAA  300
RTEGAVVTRM KTKLEHDPWL VTLVRQMISV EVERQMHGVG PQARSSAGGG GGADGDGVNG  360
QDTSMDVDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-34541553104C-Myb DNA-Binding Domain
1msf_C4e-34541553104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC213884.3_FG002
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC213884.3_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276590.0KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649548.10.0transcription factor MYB3R-3
TrEMBLK7V3M20.0K7V3M2_MAIZE; MYB transcription factor (Fragment)
STRINGAC213884.3_FGP0020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-52myb domain protein r1