PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AC212823.4_FGP003 | ||||||||
Common Name | LOC103627219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 389aa MW: 43181.4 Da PI: 10.6499 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.9 | 5.3e-23 | 213 | 262 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskR ng+lKK +ELS+LCda++ +ii+sst lye+s+ AC212823.4_FGP003 213 RIDNSMSRQVTFSKRWNGLLKKMKELSILCDAKIGLIIISSTSMLYEFSN 262 8***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.510.10 | 1.5E-7 | 109 | 162 | No hit | No description |
SuperFamily | SSF56112 | 1.89E-8 | 109 | 164 | IPR011009 | Protein kinase-like domain |
SMART | SM00432 | 2.0E-24 | 204 | 263 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.936 | 204 | 264 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-21 | 206 | 226 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.16E-20 | 207 | 264 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-19 | 213 | 260 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-21 | 226 | 241 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-21 | 241 | 262 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00368 | 2.6E-7 | 258 | 304 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II |
SuperFamily | SSF55035 | 4.58E-10 | 263 | 305 | IPR009023 | Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain |
Gene3D | G3DSA:3.30.70.420 | 1.5E-12 | 263 | 306 | IPR009023 | Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain |
PROSITE profile | PS50065 | 9.71 | 264 | 306 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015936 | Biological Process | coenzyme A metabolic process | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004420 | Molecular Function | hydroxymethylglutaryl-CoA reductase (NADPH) activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity | ||||
GO:0050662 | Molecular Function | coenzyme binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MAASSSSNSS PIGCLHPTLI FMRGTIVPNP MTPRSADSSC THDLHPKRKD RLVERAPYAR 60 PVVPRGGARE EDGQAGLGLG LLARARQHGL HLLPHRTQSP LARSPFNLQA LILMYQLCNS 120 VAFVHDPKVL HRELKLHILL KDHKTMVLKI ADLSLSHAIS SSWPRAPSRT LPPLSAWRSP 180 LPTTATPHDC ELVKSIKRHR VLFDEEGKIV VRRIDNSMSR QVTFSKRWNG LLKKMKELSI 240 LCDAKIGLII ISSTSMLYEF SNTKSSRFGR LQGVKRAIAG RNLYKRCSCS CSTGDAMGMN 300 MISKDVLFVR VGGSGEQGSK GEVACYIRLR HVWWRRAAGL GFVGNTLVEG DYLFVPSKCQ 360 GGIQRVHIIK GCVDGSLLLK ILQEMEKEQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.87304 | 6e-39 | ear| embryo| endosperm| meristem| ovary| pollen| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | AC212823.4_FG003 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AC212823.4_FGP003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT042510 | 1e-36 | BT042510.1 Zea mays full-length cDNA clone ZM_BFb0310C21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6H9I5 | 0.0 | A0A1D6H9I5_MAIZE; Uncharacterized protein | ||||
STRING | AC212823.4_FGP003 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14210.1 | 1e-21 | AGAMOUS-like 44 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AC212823.4_FGP003 |
Entrez Gene | 103627219 |