PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC211891.4_FGP001
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 410aa    MW: 44284.1 Da    PI: 10.1756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC211891.4_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001166187122
                        EEETTTTEEESSHHHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                        y+C+ Cgks++++  L  H   
  AC211891.4_FGP001 166 YTCKECGKSYPTNQALGGHVAG 187
                        9************999888765 PP
2zf-C2H215.84.1e-05221243123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +Cgk+Fs    L  H+r H
  AC211891.4_FGP001 221 HVCLKCGKMFSKAVALGGHMRAH 243
                        79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.1E-7165186IPR007087Zinc finger, C2H2
SuperFamilySSF576679.21E-7166188No hitNo description
SMARTSM003550.12166188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554166193IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
SuperFamilySSF576679.21E-7216243No hitNo description
PfamPF139126.0E-5221244IPR007087Zinc finger, C2H2
SMARTSM003550.076221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408221249IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MPGWQEPPDD DALDLEAAAL LRHPPVRPLL GCSAAALLAP CSDRRLLLRS TTPQPSCVHG  60
GTPARLHDSP GVHDCPRAHL LLELGRSAAP ARIVGFLQRP SAPAAAVQPA DLVGNSASTA  120
SCSRELFVGI FSHRIPIYPT GMETGKIYRL SLVAPSCINP GSATAYTCKE CGKSYPTNQA  180
LGGHVAGHKN KQREAEAVAA AAEAGPDATV LDRRDKVGQS HVCLKCGKMF SKAVALGGHM  240
RAHYTGPRIV IVRNNKKRCL VPPPPAEEDL ASPPPPEEDW AVAGLSRSLS IRAEEELVAP  300
WRHCHRHRRC QRQMKTWRRG AGSRCLSTRK KSRRRLLLRP ELTECCVSSA LILISASTKK  360
SRAPARQRHD GARALLEGVV QKIGGPLEEV GSPNPHKILT MMHLIHSGRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332339RRRLLLRP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC211891.4_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC211891.4_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6EIJ80.0A0A1D6EIJ8_MAIZE; Uncharacterized protein
STRINGAC211891.4_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Representative plantOGRP1732523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-10C2H2-like zinc finger protein